RNA id: TCONS_00008774


Basic Information

Item Value
RNA id TCONS_00008774
length 787
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_004002
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12463700 ~ 12464486 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGCAGCAGGTCTACATGTTCTGTTAAGAGACTGGATTCTGAGAGCGAGATCCTGTGAAGTGTTTATCAAAGTTAAAAAGAAGAACTGGATCTGTGTAAGTTTTAAATGTGACAGAAtgtgtgtctctgtctgtctggatCGCTCTGACTGTGATTTTGGTGTCACATTTAGGTTCAGCAACTGTCCGGAGTTGGTGGATGTTCTGTCCGAGCCTGATTAAAAGAGTGATAAACGGGTACATATTTATCTTgcattgtttgtgtttatttctgcACAATATttcaggaaaatatattttactacCCCAACAATTAACCCagcattttatataattaaaactgTAGATTTCATCTGTCATTCATCATTGTACGTCTCCTTATAGACATGCCTGTTTTAATgttcagatgttttaaaatgtttgtacagACTCAGGCTGTCAAGCAGActgaaaatattaaatgataatttTAGTGTAAGCCATGAATGACAGTCTTTGCTTGTCACAAAACTGTGGATGTGTGGATATGGGCAGTTGTAAAATGATGAGTAGTAGGGAATATGTATGTATTGACATTAGATACTGCTCTGCACATTGCTGTTCATTCATGAAACATGACAGTAATTCTTGATATGTTGTAAGTTTTTAGTTTTAAGATGATACAAAATCATATTCTCCTTCCTCAGATGCTGTGAAGTGAGTCCAGATGCTACAGACACAGAAAAAGATGCAGCAATGGAGGAACACAGCAAGCACCTTCCAGGAAGAGCTGGAGAATAGTAGAAAT

Function

GO:

id name namespace
GO:0042572 retinol metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008771 lncRNA downstream 33591 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00007602 lncRNA downstream 243731 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00007600 lncRNA downstream 250269 12213149 ~ 12213431 (-) True XLOC_003977
TCONS_00007594 lncRNA downstream 277556 12185854 ~ 12186144 (-) True XLOC_003975
TCONS_00007591 lncRNA downstream 297693 12165723 ~ 12166007 (-) True XLOC_003972
TCONS_00007671 lncRNA upstream 269645 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007672 lncRNA upstream 274690 12739176 ~ 12741136 (-) True XLOC_004023
TCONS_00007692 lncRNA upstream 1333967 13798453 ~ 13800802 (-) False XLOC_004032
TCONS_00008775 lncRNA upstream 1334006 13798492 ~ 13800113 (-) False XLOC_004032
TCONS_00007693 lncRNA upstream 1335190 13799676 ~ 13800802 (-) True XLOC_004032
TCONS_00007635 mRNA downstream 11218 12450564 ~ 12452482 (-) False XLOC_004001
TCONS_00007636 mRNA downstream 11387 12450662 ~ 12452313 (-) False XLOC_004001
TCONS_00007637 mRNA downstream 11387 12450972 ~ 12452313 (-) True XLOC_004001
TCONS_00007631 mRNA downstream 26466 12435301 ~ 12437234 (-) False XLOC_003999
TCONS_00007632 mRNA downstream 26648 12435399 ~ 12437052 (-) False XLOC_003999
TCONS_00007638 mRNA upstream 5603 12470089 ~ 12472006 (-) False XLOC_004003
TCONS_00007639 mRNA upstream 5701 12470187 ~ 12471837 (-) False XLOC_004003
TCONS_00007640 mRNA upstream 6011 12470497 ~ 12471837 (-) True XLOC_004003
TCONS_00007641 mRNA upstream 16899 12481385 ~ 12483302 (-) False XLOC_004004
TCONS_00007642 mRNA upstream 17307 12481793 ~ 12483120 (-) True XLOC_004004
TCONS_00007634 other downstream 25320 12438084 ~ 12438380 (-) True XLOC_004000
TCONS_00007628 other downstream 67886 12395518 ~ 12395814 (-) True XLOC_003995
TCONS_00007621 other downstream 112145 12351259 ~ 12351555 (-) True XLOC_003991
TCONS_00007616 other downstream 139774 12323630 ~ 12323926 (-) True XLOC_003988
TCONS_00007613 other downstream 174032 12289372 ~ 12289668 (-) True XLOC_003985
TCONS_00007645 other upstream 35480 12499966 ~ 12500262 (-) True XLOC_004006
TCONS_00007648 other upstream 48480 12512966 ~ 12513262 (-) True XLOC_004008
TCONS_00007656 other upstream 126513 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007658 other upstream 157032 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007664 other upstream 226909 12691395 ~ 12691691 (-) True XLOC_004019

Expression Profile

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