RNA id: TCONS_00007632


Basic Information

Item Value
RNA id TCONS_00007632
length 834
RNA type mRNA
GC content 0.53
exon number 7
gene id XLOC_003999
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12435301 ~ 12437234 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCAGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgaGAATCTGGCTGAAGCAAAGGCATCAGAGGAGGACAAGCTAAAAGCGGTGATGTACCAGTCCAGTCTGTGCTACTACTCCAGCAGTGAGGCCATGACACTGCTTGGGCTTCTTCCACCCAACTATGTCTGCTTTCACTGTGGGATCCCAGGACACCACATTAGGCACTGCCCCTCTAAAGGGggcagcagctctgctccGCTTAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGACCTTCCTTCTGCCAGACCAAGCCGCtgtcctcctcttcctcagctgGTGCAGCATCTTCAGTCCAGGACGCCAGAGGGAAACGTTCCCGCTCCCCATCTCCACCAGAGACGCACGGAGACCAGAAGAGACCACGTCACTGA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080214-3 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human RBBP6 (RB binding protein 6, ubiquitin ligase).

Ensembl:

ensembl_id ENSDART00000190890

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008771 lncRNA downstream 5290 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00007602 lncRNA downstream 215430 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00007600 lncRNA downstream 221968 12213149 ~ 12213431 (-) True XLOC_003977
TCONS_00007594 lncRNA downstream 249255 12185854 ~ 12186144 (-) True XLOC_003975
TCONS_00007591 lncRNA downstream 269392 12165723 ~ 12166007 (-) True XLOC_003972
TCONS_00008774 lncRNA upstream 26648 12463700 ~ 12464486 (-) True XLOC_004002
TCONS_00007671 lncRNA upstream 297079 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007672 lncRNA upstream 302124 12739176 ~ 12741136 (-) True XLOC_004023
TCONS_00007692 lncRNA upstream 1361401 13798453 ~ 13800802 (-) False XLOC_004032
TCONS_00008775 lncRNA upstream 1361440 13798492 ~ 13800113 (-) False XLOC_004032
TCONS_00007629 mRNA downstream 17447 12416065 ~ 12417952 (-) False XLOC_003996
TCONS_00007630 mRNA downstream 17625 12416473 ~ 12417774 (-) True XLOC_003996
TCONS_00007626 mRNA downstream 40717 12392715 ~ 12394682 (-) False XLOC_003994
TCONS_00007627 mRNA downstream 40899 12392813 ~ 12394500 (-) True XLOC_003994
TCONS_00007624 mRNA downstream 55858 12377621 ~ 12379541 (-) False XLOC_003993
TCONS_00007635 mRNA upstream 13512 12450564 ~ 12452482 (-) False XLOC_004001
TCONS_00007636 mRNA upstream 13610 12450662 ~ 12452313 (-) False XLOC_004001
TCONS_00007637 mRNA upstream 13920 12450972 ~ 12452313 (-) True XLOC_004001
TCONS_00007638 mRNA upstream 33037 12470089 ~ 12472006 (-) False XLOC_004003
TCONS_00007639 mRNA upstream 33135 12470187 ~ 12471837 (-) False XLOC_004003
TCONS_00007628 other downstream 39585 12395518 ~ 12395814 (-) True XLOC_003995
TCONS_00007621 other downstream 83844 12351259 ~ 12351555 (-) True XLOC_003991
TCONS_00007616 other downstream 111473 12323630 ~ 12323926 (-) True XLOC_003988
TCONS_00007613 other downstream 145731 12289372 ~ 12289668 (-) True XLOC_003985
TCONS_00007611 other downstream 181243 12253860 ~ 12254156 (-) True XLOC_003983
TCONS_00007634 other upstream 1032 12438084 ~ 12438380 (-) True XLOC_004000
TCONS_00007645 other upstream 62914 12499966 ~ 12500262 (-) True XLOC_004006
TCONS_00007648 other upstream 75914 12512966 ~ 12513262 (-) True XLOC_004008
TCONS_00007656 other upstream 153947 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007658 other upstream 184466 12621518 ~ 12621767 (-) True XLOC_004015