XLOC_003994 (si:dkey-27d5.10)


Basic Information

Item Value
gene id XLOC_003994
gene name si:dkey-27d5.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12392715 ~ 12394682 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007626
CAACGgttctttttgtgttgttttgaactccGCTCTGTCATTGGCATCTGATCTCGGCGTCCTTCGTGGCAACTGATTCCCagattattgatattattgattGTTGGATACATCGATTGATCGTCTGCTTCTCCCATCATTCAGGTTTGACCCTTGTTATCACACTGTGGTTTGTGTTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCATAGATGATGATGCTCTCATCCCCAAAAACACATCGGTCATCATCAGACGGGTCCCTGCGGCTGGCCTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagGGCAGCAGCTTTGCTCCGCATAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCCTTCTGCCAGACCAAGCCGCTGTCCTCCTCTTCCTTAGCAGGTGCGGAGACTTCAGTCTGGTATGCCGGAGGGAAACGATCCCGCTCCCCATCTTCATCAGAGACGCACGGCGACCAGAAGAGACCACGTCACTGAGAGACCTTCATCCAAGAGACCTGGAGCTGACGTGAGCACagtgtatatattgtacatagtttatgaataaaactgaataaatattatagCAGCATAAA
>TCONS_00007627
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCATAGATGATGATGCTCTCATCCCCAAAAACACATCGGTCATCATCAGACGGGTCCCTGCGGCTGGCCTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagTGAGGCCATGACACTACTTGGGCTTCTTCCACCCAACTATGTCTGCTTTCACTGTGGGATCCCAGGACACCACATTAGGCACTGCCCCTCTAAAGGGGGCAGCAGCTTTGCTCCGCATAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCCTTCTGCCAGACCAAGCCGCTGTCCTCCTCTTCCTTAGCAGGTGCGGAGACTTCAGTCTGGTATGCCGGAGGGAAACGATCCCGCTCCCCATCTTCATCAGAGACGCACGGCGACCAGAAGAGACCACGTCACTGA

Function

symbol description
si:dkey-27d5.10 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-46 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000094196

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007626 False 1017 mRNA 0.50 6 12392715 12394682
TCONS_00007627 True 834 mRNA 0.53 7 12392813 12394500

Neighbor

gene id symbol gene type direction distance location
XLOC_003993 zgc:174353 coding downstream 13174 12377621 ~ 12379541 (-)
XLOC_003992 zgc:174353 coding downstream 28593 12362231 ~ 12364122 (-)
XLOC_003990 si:dkey-27d5.14 coding downstream 42296 12348479 ~ 12350419 (-)
XLOC_003989 zgc:91850 coding downstream 58169 12332626 ~ 12334546 (-)
XLOC_003987 zgc:174355 coding downstream 70030 12321345 ~ 12322685 (-)
XLOC_003996 si:dkey-27d5.9 coding upstream 21383 12416065 ~ 12417952 (-)
XLOC_003997 NA coding upstream 34701 12429383 ~ 12491279 (-)
XLOC_003998 NA coding upstream 35473 12430155 ~ 12465409 (-)
XLOC_003999 zgc:174355 coding upstream 40619 12435301 ~ 12437234 (-)
XLOC_004001 zgc:174354 coding upstream 55882 12450564 ~ 12452482 (-)
XLOC_003991 BX000700.22 misc downstream 41160 12351259 ~ 12351555 (-)
XLOC_003988 LO017719.2 misc downstream 68789 12323630 ~ 12323926 (-)
XLOC_003985 CABZ01022564.3 misc downstream 103047 12289372 ~ 12289668 (-)
XLOC_003983 FO904934.1 misc downstream 138559 12253860 ~ 12254156 (-)
XLOC_003979 BX469912.8 misc downstream 171529 12220890 ~ 12221186 (-)
XLOC_003995 BX000700.6 misc upstream 836 12395518 ~ 12395814 (-)
XLOC_004000 BX000700.23 misc upstream 43402 12438084 ~ 12438380 (-)
XLOC_004006 BX000700.27 misc upstream 105284 12499966 ~ 12500262 (-)
XLOC_004008 BX000700.19 misc upstream 118284 12512966 ~ 12513262 (-)
XLOC_004013 CABZ01022569.1 misc upstream 196317 12590999 ~ 12591296 (-)
XLOC_003977 NA non-coding downstream 179284 12213149 ~ 12213431 (-)
XLOC_003975 NA non-coding downstream 206571 12185854 ~ 12186144 (-)
XLOC_003972 NA non-coding downstream 226708 12165723 ~ 12166007 (-)
XLOC_003962 CR848705.2 non-coding downstream 686579 11639483 ~ 11706136 (-)
XLOC_003960 NA non-coding downstream 790835 11594994 ~ 11601880 (-)
XLOC_004002 NA non-coding upstream 69018 12463700 ~ 12464486 (-)
XLOC_004024 CR450764.5 non-coding upstream 361461 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 1087989 13482671 ~ 13482787 (-)

Expression


Co-expression Network