XLOC_003996 (si:dkey-27d5.9)


Basic Information

Item Value
gene id XLOC_003996
gene name si:dkey-27d5.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12416065 ~ 12417952 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007629
CAACGgttctttttgtgttgttttgaacttcGCTCATTGGCATCTGATCTCGGCGTCCTTCGTGGCTACTGATTCCCagattattgatattattgattGTTGGATACATCGATTGATCGTCTGCTTCTCCCATCATTCAGGTTTGACCCTTGTTATCACACTGTGGTTTGTATTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCTCCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGCGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAATTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCTGTCATCATCAGACGGGTCCCTGCTGCTGGACTGAAGTCATCAAACAGAAGATTTGTTGgacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatttggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccACACAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCCTTCTCCTGCCAGACCAAGCCgctgccctcctcttcctcagctGGTGCAGCATCTTCAGTCCAGGACGCCAGAGGGAAACGTTCCCGCTCCCCATCTTCACCAGAGACGCACGGCGACCAGAAGAGACCCCGTCATTGAGAGACCTTCACCCAAGAGACCTGGAGCCGACGTGAGCACagtgtatatattgtacataGTTTATGAACAAAACTGAATAAAGATTTTAGCAGCATAAA
>TCONS_00007630
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCTCCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGCGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAATTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCTGTCATCATCAGACGGGTCCCTGCTGCTGGACTGAAGTCATCAAACAGAAGATTTGTTGgacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatttggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccACACAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

symbol description
si:dkey-27d5.9 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000116576

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007629 False 1016 mRNA 0.50 6 12416065 12417952
TCONS_00007630 True 525 mRNA 0.51 5 12416473 12417774

Neighbor

gene id symbol gene type direction distance location
XLOC_003994 si:dkey-27d5.10 coding downstream 21383 12392715 ~ 12394682 (-)
XLOC_003993 zgc:174353 coding downstream 36524 12377621 ~ 12379541 (-)
XLOC_003992 zgc:174353 coding downstream 51943 12362231 ~ 12364122 (-)
XLOC_003990 si:dkey-27d5.14 coding downstream 65646 12348479 ~ 12350419 (-)
XLOC_003989 zgc:91850 coding downstream 81519 12332626 ~ 12334546 (-)
XLOC_003997 NA coding upstream 11431 12429383 ~ 12491279 (-)
XLOC_003998 NA coding upstream 12203 12430155 ~ 12465409 (-)
XLOC_003999 zgc:174355 coding upstream 17349 12435301 ~ 12437234 (-)
XLOC_004001 zgc:174354 coding upstream 32612 12450564 ~ 12452482 (-)
XLOC_004002 NA coding upstream 45748 12463700 ~ 12464486 (-)
XLOC_003995 BX000700.6 misc downstream 20251 12395518 ~ 12395814 (-)
XLOC_003991 BX000700.22 misc downstream 64510 12351259 ~ 12351555 (-)
XLOC_003988 LO017719.2 misc downstream 92139 12323630 ~ 12323926 (-)
XLOC_003985 CABZ01022564.3 misc downstream 126397 12289372 ~ 12289668 (-)
XLOC_003983 FO904934.1 misc downstream 161909 12253860 ~ 12254156 (-)
XLOC_004000 BX000700.23 misc upstream 20132 12438084 ~ 12438380 (-)
XLOC_004006 BX000700.27 misc upstream 82014 12499966 ~ 12500262 (-)
XLOC_004008 BX000700.19 misc upstream 95014 12512966 ~ 12513262 (-)
XLOC_004013 CABZ01022569.1 misc upstream 173047 12590999 ~ 12591296 (-)
XLOC_004015 CR450764.4 misc upstream 203566 12621518 ~ 12621767 (-)
XLOC_003977 NA non-coding downstream 202634 12213149 ~ 12213431 (-)
XLOC_003975 NA non-coding downstream 229921 12185854 ~ 12186144 (-)
XLOC_003972 NA non-coding downstream 250058 12165723 ~ 12166007 (-)
XLOC_003962 CR848705.2 non-coding downstream 709929 11639483 ~ 11706136 (-)
XLOC_003960 NA non-coding downstream 814185 11594994 ~ 11601880 (-)
XLOC_004024 CR450764.5 non-coding upstream 338191 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 1064719 13482671 ~ 13482787 (-)

Expression


Co-expression Network