RNA id: TCONS_00007629


Basic Information

Item Value
RNA id TCONS_00007629
length 1016
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_003996
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12416065 ~ 12417952 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACGgttctttttgtgttgttttgaacttcGCTCATTGGCATCTGATCTCGGCGTCCTTCGTGGCTACTGATTCCCagattattgatattattgattGTTGGATACATCGATTGATCGTCTGCTTCTCCCATCATTCAGGTTTGACCCTTGTTATCACACTGTGGTTTGTATTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCTCCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGCGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAATTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCTGTCATCATCAGACGGGTCCCTGCTGCTGGACTGAAGTCATCAAACAGAAGATTTGTTGgacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatttggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccACACAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCCTTCTCCTGCCAGACCAAGCCgctgccctcctcttcctcagctGGTGCAGCATCTTCAGTCCAGGACGCCAGAGGGAAACGTTCCCGCTCCCCATCTTCACCAGAGACGCACGGCGACCAGAAGAGACCCCGTCATTGAGAGACCTTCACCCAAGAGACCTGGAGCCGACGTGAGCACagtgtatatattgtacataGTTTATGAACAAAACTGAATAAAGATTTTAGCAGCATAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000135694

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007602 lncRNA downstream 196096 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00007600 lncRNA downstream 202634 12213149 ~ 12213431 (-) True XLOC_003977
TCONS_00007594 lncRNA downstream 229921 12185854 ~ 12186144 (-) True XLOC_003975
TCONS_00007591 lncRNA downstream 250058 12165723 ~ 12166007 (-) True XLOC_003972
TCONS_00008770 lncRNA downstream 709929 11646506 ~ 11706136 (-) True XLOC_003962
TCONS_00008771 lncRNA upstream 11431 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00008772 lncRNA upstream 11431 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00008773 lncRNA upstream 12203 12430155 ~ 12465409 (-) True XLOC_003998
TCONS_00008774 lncRNA upstream 45748 12463700 ~ 12464486 (-) True XLOC_004002
TCONS_00007671 lncRNA upstream 316179 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007626 mRNA downstream 21383 12392715 ~ 12394682 (-) False XLOC_003994
TCONS_00007627 mRNA downstream 21565 12392813 ~ 12394500 (-) True XLOC_003994
TCONS_00007624 mRNA downstream 36524 12377621 ~ 12379541 (-) False XLOC_003993
TCONS_00007625 mRNA downstream 36706 12377719 ~ 12379359 (-) True XLOC_003993
TCONS_00007622 mRNA downstream 51943 12362231 ~ 12364122 (-) False XLOC_003992
TCONS_00007631 mRNA upstream 17349 12435301 ~ 12437234 (-) False XLOC_003999
TCONS_00007632 mRNA upstream 17447 12435399 ~ 12437052 (-) False XLOC_003999
TCONS_00007633 mRNA upstream 17754 12435706 ~ 12437052 (-) True XLOC_003999
TCONS_00007635 mRNA upstream 32612 12450564 ~ 12452482 (-) False XLOC_004001
TCONS_00007636 mRNA upstream 32710 12450662 ~ 12452313 (-) False XLOC_004001
TCONS_00007628 other downstream 20251 12395518 ~ 12395814 (-) True XLOC_003995
TCONS_00007621 other downstream 64510 12351259 ~ 12351555 (-) True XLOC_003991
TCONS_00007616 other downstream 92139 12323630 ~ 12323926 (-) True XLOC_003988
TCONS_00007613 other downstream 126397 12289372 ~ 12289668 (-) True XLOC_003985
TCONS_00007611 other downstream 161909 12253860 ~ 12254156 (-) True XLOC_003983
TCONS_00007634 other upstream 20132 12438084 ~ 12438380 (-) True XLOC_004000
TCONS_00007645 other upstream 82014 12499966 ~ 12500262 (-) True XLOC_004006
TCONS_00007648 other upstream 95014 12512966 ~ 12513262 (-) True XLOC_004008
TCONS_00007656 other upstream 173047 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007658 other upstream 203566 12621518 ~ 12621767 (-) True XLOC_004015

Expression Profile

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