RNA id: TCONS_00007635


Basic Information

Item Value
RNA id TCONS_00007635
length 1007
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_004001
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12450564 ~ 12452482 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACGgttctttttgtgttgttttgaacttcGCTCATTGGCATCTGATCTCGGCGTCCTTCGTGGCTACTGATTCCCAGATTATTGATTGTTGGATACATCGATTGATCGTCTGCTTCTCCCATCATTCAGGTTTGACCCTTGTTATCACACTGTGGTTTGTATTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGGCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCGGTCATCATCAGACGGGTCCCTGCGGCTGGGCTGAAGTCCTCCAACAGAAGATTTGTTGgacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctgaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCATAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCCTTCTCCTGCCAGACCAAGCCGCTTTCCTTCTCTTCCTCAGCTGGTGCAGCATCTTCAGTCCAAGATGCCAGAGGGAAACGTTCCCGTTCCCCATCTCCACCAGAGACGCACGGCGACCAGAAGAGACCACGTCACTGAGAGACCTTCACCCAAGAGACCTGGAGCCGACGTGAGCACagtgtatatattgtacatagtttatgaataaaactgaataaagattATAGCAGCATAAA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-8 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000159554

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008771 lncRNA downstream 20455 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00007602 lncRNA downstream 230595 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00007600 lncRNA downstream 237133 12213149 ~ 12213431 (-) True XLOC_003977
TCONS_00007594 lncRNA downstream 264420 12185854 ~ 12186144 (-) True XLOC_003975
TCONS_00007591 lncRNA downstream 284557 12165723 ~ 12166007 (-) True XLOC_003972
TCONS_00008774 lncRNA upstream 11218 12463700 ~ 12464486 (-) True XLOC_004002
TCONS_00007671 lncRNA upstream 281649 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007672 lncRNA upstream 286694 12739176 ~ 12741136 (-) True XLOC_004023
TCONS_00007692 lncRNA upstream 1345971 13798453 ~ 13800802 (-) False XLOC_004032
TCONS_00008775 lncRNA upstream 1346010 13798492 ~ 13800113 (-) False XLOC_004032
TCONS_00007631 mRNA downstream 13330 12435301 ~ 12437234 (-) False XLOC_003999
TCONS_00007632 mRNA downstream 13512 12435399 ~ 12437052 (-) False XLOC_003999
TCONS_00007633 mRNA downstream 13512 12435706 ~ 12437052 (-) True XLOC_003999
TCONS_00007629 mRNA downstream 32612 12416065 ~ 12417952 (-) False XLOC_003996
TCONS_00007630 mRNA downstream 32790 12416473 ~ 12417774 (-) True XLOC_003996
TCONS_00007638 mRNA upstream 17607 12470089 ~ 12472006 (-) False XLOC_004003
TCONS_00007639 mRNA upstream 17705 12470187 ~ 12471837 (-) False XLOC_004003
TCONS_00007640 mRNA upstream 18015 12470497 ~ 12471837 (-) True XLOC_004003
TCONS_00007641 mRNA upstream 28903 12481385 ~ 12483302 (-) False XLOC_004004
TCONS_00007642 mRNA upstream 29311 12481793 ~ 12483120 (-) True XLOC_004004
TCONS_00007634 other downstream 12184 12438084 ~ 12438380 (-) True XLOC_004000
TCONS_00007628 other downstream 54750 12395518 ~ 12395814 (-) True XLOC_003995
TCONS_00007621 other downstream 99009 12351259 ~ 12351555 (-) True XLOC_003991
TCONS_00007616 other downstream 126638 12323630 ~ 12323926 (-) True XLOC_003988
TCONS_00007613 other downstream 160896 12289372 ~ 12289668 (-) True XLOC_003985
TCONS_00007645 other upstream 47484 12499966 ~ 12500262 (-) True XLOC_004006
TCONS_00007648 other upstream 60484 12512966 ~ 12513262 (-) True XLOC_004008
TCONS_00007656 other upstream 138517 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007658 other upstream 169036 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007664 other upstream 238913 12691395 ~ 12691691 (-) True XLOC_004019

Expression Profile

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