RNA id: TCONS_00007671


Basic Information

Item Value
RNA id TCONS_00007671
length 885
lncRNA type retained_intron
GC content 0.45
exon number 6
gene id XLOC_004023
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12732247 ~ 12744082 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAAATGCTATATATGAAGCAAGTGTCGACTCCCAATGAAGAACGTATCTTTTCATGTCATTTGTAGTAATGAGATTGCTTACTGATTCCACAGCAGAGAACATATTCgctgtaaaatattataaaatgctgTACAAATGATCTGCCAGATTGTCTTAACCAGTTCTAACAGACATGTACTTGCACACCACAGAATTTCACCCGCCATACTGTGTATGTTTGCACCATTTATAGGAAGCAGTACAGAAAATGCTGGATCAAGCAGAGAGTCAGCTGGAAAATGGGGGACCCTGGAAAAACCCAGATGCTCCAAAGGATTACGGAACTGAAAAGGACAAGGCAAACTGTCCATTCTTCCTAAAAACTGGTGCTTGTAGATTTGGAGACCGGTGCTCTCGAAAACATGACCACCCAGCATCCAGCTGCACTCTGATGGTGAGGGGGATGTTTGTGTCATTCGGGATGGAGCAGAGCAGACGTGATGACTACGACACCGATGCCAGTCTGGAGTACAGTGAGGAGGAGTTGCACCAGCAGTTTCTGGATTTCTATGAAGACGCTCTGCCAGAGTTCAAGAACGCAGGGAGAGTGGTGCAGTTCAAGGTGAGCTGCAACTTTGAGCCTCACTTAAGAGGAAACGTTTACGTTCAGTATGAGACAGAGGAGCAATGCAAAGAAGCTTTTGTGATGTTTAATGGTCGCTGGTATGCTGGAAGACAACTGCAATGTGAATTCTCCCCTGTGACTAGATGGAAAACGGCCATTTGTGGACTATTCGACAGACGGAAATGCCCAAAGGGAAAACACTGCAACTTCCTTCATGTATTCAGAAATCCAGACAATGAGTTCTGGGAGGCGGACCGTGATCTCCACATGTCACCTGA

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0089701 U2AF complex cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0030628 pre-mRNA 3'-splice site binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1495 Predicted to enable pre-mRNA 3'-splice site binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2AF complex and spliceosomal complex. Orthologous to several human genes including ZRSR2 (zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2).

Ensembl:

ensembl_id ENSDART00000156840

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008772 lncRNA downstream 242852 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00008773 lncRNA downstream 268722 12430155 ~ 12465409 (-) True XLOC_003998
TCONS_00008774 lncRNA downstream 269645 12463700 ~ 12464486 (-) True XLOC_004002
TCONS_00008771 lncRNA downstream 304022 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00007602 lncRNA downstream 514162 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00007692 lncRNA upstream 1057317 13798453 ~ 13800802 (-) False XLOC_004032
TCONS_00008775 lncRNA upstream 1057356 13798492 ~ 13800113 (-) False XLOC_004032
TCONS_00007693 lncRNA upstream 1058540 13799676 ~ 13800802 (-) True XLOC_004032
TCONS_00008776 lncRNA upstream 1406527 14147663 ~ 14148426 (-) True XLOC_004034
TCONS_00008777 lncRNA upstream 1567761 14308897 ~ 14311083 (-) False XLOC_004035
TCONS_00007668 mRNA downstream 17127 12715064 ~ 12717004 (-) True XLOC_004022
TCONS_00007666 mRNA downstream 28377 12703887 ~ 12705754 (-) False XLOC_004021
TCONS_00007667 mRNA downstream 28523 12704296 ~ 12705608 (-) True XLOC_004021
TCONS_00007662 mRNA downstream 43592 12688642 ~ 12690539 (-) False XLOC_004018
TCONS_00007663 mRNA downstream 43738 12689047 ~ 12690393 (-) True XLOC_004018
TCONS_00007674 mRNA upstream 41160 12782296 ~ 12802123 (-) False XLOC_004025
TCONS_00007675 mRNA upstream 44190 12785326 ~ 12800945 (-) False XLOC_004025
TCONS_00007676 mRNA upstream 44190 12785326 ~ 12801157 (-) True XLOC_004025
TCONS_00007677 mRNA upstream 241124 12982260 ~ 12998400 (-) True XLOC_004026
TCONS_00007678 mRNA upstream 353043 13094179 ~ 13107106 (-) False XLOC_004027
TCONS_00007664 other downstream 42440 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 112364 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 142835 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007648 other downstream 220869 12512966 ~ 12513262 (-) True XLOC_004008
TCONS_00007645 other downstream 233869 12499966 ~ 12500262 (-) True XLOC_004006
TCONS_00007673 other upstream 15007 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007689 other upstream 741535 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007741 other upstream 3276747 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 3279793 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 3317055 16058191 ~ 16058307 (-) True XLOC_004059

Expression Profile

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