RNA id: TCONS_00008777


Basic Information

Item Value
RNA id TCONS_00008777
length 2187
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id XLOC_004035
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14308897 ~ 14311237 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGGGTGGGACCGGGATGGTTTGTTTACagggttgctatggtaacggTGAACCGCAAGAGTGTCATTACTAGAGCGCCTTGATTTTGAACAACAACGCAGCCGTCTCATCTTTTAGGTGGGTAAATCCTATCACAAAATCGATGAAATGTTAAGATAACATGTTACTCAAGTGTGTTTACAAGTTTAGTGAGGTAACGTGCAGTTAAAGAGTTAATTAGTAGCGAAGATTGTATCTGTTTGCTGGCATTGTATCAAAACGGCAGTTAGCGGCCGGTTGTGTTATATGATAACTGCAAAGTTAACTAAAGGGCTCCACCACGCTGGAATCCTCtgtaaatgttatgtttttatattcaagTTGTTAAAACGATATTAATATCACTTTCGATTGTATAAATACACTTTTGGTTTAAGACGATGGTTACAAGTTACAGAGTTGTTTACGTTTGGATTACACAGAGCTGTCCCAGAGATGCTGACTAGCCTAGCAACTGCTAGAAGGGCTCTGACCAGATAAAAAGATCATGCTGATCTGCAAAGCATTTAAAGGTAGAGTATGTAATGTTTCTATATTATAACCCTCTGTAACAGGAGTTAAAAGGAAATCTGAAGGAAAATTACTAGTCATGTACAGTAAGAACAGTAGAAACAGTTAAGTAAGTAACATTTATTTGTCCACAAATTTTTAAAGACTGAAACACTTTTCATAATCCTGGAGTCTTTTTACAACCCCAGGGGCTTTGTAacaactacaaataataatataagtttttaactttatttataatgttgGTCAATTTGTCTAATTTTAAAGCCTGCCAAGCACATCTTTTtcataatcataatatttttgGTCTGAGTATTAACAATTTAGAAACAGAAACAACCCTTAAAAGAAAATCTATCCTCAGATTCAATAGATGTGATATACGTTATGTATTAACTACTAGTATAATTGTAAGTGTACTACTTGAAAATTACACAATGACATTTTTCATCTGTACGGCAAGTGGTTATAAATACTTGTAAATATTTAGTTTCTGTACTCTATTCTATGCTCAGAACTTGACTATTGCACTTAACCATTACAACTGCACACACAGTAATAGatacacgcgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacactgctgtataCTGAATATACTCCATACTTTCTTAATTATAGTTTAAAATGAATATACTAATAGTATACTtgagaatacatttttttttgtaagagtacatggacccttttcacaaaaaAGGTTATGATGTGTTGATGGTGATAAACATCTTAAATCTTTAGTTCTTtttcattttagatttttaaaaaaatatgtacactTCTAAAGCTATACTTTGTATTATGTCATCTGTGcgtcaaactacaaaaaaaaataaaataaaaaatattgcttgtgtcaggtgtttctaatgcagtgcctatgggcaggacagtaaatttgacgttgttcTCTCCTCTGGTtgccattatcagtctcacactattattattattttatttatttttttatttattgttttttttctgaaagtattGATAACACCATCATTTGGTTTTTCTTTGGTTATTGGagcaaaataaaatgcaaacattttgttGTATTCTGCCATTAGtatgatgacttctgctactTAACAACCCAgaattgtgaaaagggtccatcgAACCTAAATAACACATTGATTTTAACATTTGAAtttcaattgttttatttctCAGACACTGTCACAAAAATCAGCAAAGGAACAGCTTGCCAAGTAGAAGCAACAATAAAATCATGGTTAAGAAAGTCAAGAGACAGAGATGGTGGGCGCCAAGGAATGGCCAAAACTCAGAAAGGACTTACTTTTAATGAAATTTTTTGGAGTTAAAAATGGCTTTTTCTTTTCTGTGTTTAttcatgtttgattttgtattaaatataattctGTTTCAATATCAtacagttgttaatttttttgttattaaactctgtaaataaataattactaacATGACCCAGTTTAGTGTCAAGTAAAACTGTTCtgaaaatgcattgtataatggTTTTCTGTATGTACAAAGTAGAACCAGACTCAGTGGCTCAGACAGGATCATTGCGAGCAGCCCACTGTGGGCCCAATGGTG

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042255 ribosome assembly biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0033334 fin morphogenesis biological_process
GO:0009790 embryo development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008776 lncRNA downstream 160471 14147663 ~ 14148426 (-) True XLOC_004034
TCONS_00007692 lncRNA downstream 508095 13798453 ~ 13800802 (-) False XLOC_004032
TCONS_00007693 lncRNA downstream 508095 13799676 ~ 13800802 (-) True XLOC_004032
TCONS_00008775 lncRNA downstream 508784 13798492 ~ 13800113 (-) False XLOC_004032
TCONS_00007671 lncRNA downstream 1567761 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00008778 lncRNA upstream 119839 14430922 ~ 14432200 (-) True XLOC_004036
TCONS_00007698 lncRNA upstream 382398 14693481 ~ 14695864 (-) True XLOC_004038
TCONS_00008779 lncRNA upstream 443822 14754905 ~ 14759080 (-) False XLOC_004039
TCONS_00008780 lncRNA upstream 443822 14754905 ~ 14759088 (-) True XLOC_004039
TCONS_00007702 lncRNA upstream 516291 14827374 ~ 14829324 (-) True XLOC_004041
TCONS_00007694 mRNA downstream 206739 14071689 ~ 14102158 (-) False XLOC_004033
TCONS_00007695 mRNA downstream 206766 14072782 ~ 14102131 (-) True XLOC_004033
TCONS_00007691 mRNA downstream 690485 13616015 ~ 13618412 (-) True XLOC_004031
TCONS_00007690 mRNA downstream 697765 13605623 ~ 13611132 (-) True XLOC_004030
TCONS_00007687 mRNA downstream 967414 13280248 ~ 13341483 (-) False XLOC_004028
TCONS_00007697 mRNA upstream 355983 14667066 ~ 14669026 (-) True XLOC_004037
TCONS_00007699 mRNA upstream 460825 14771908 ~ 14813029 (-) False XLOC_004040
TCONS_00007700 mRNA upstream 461515 14772598 ~ 14789918 (-) False XLOC_004040
TCONS_00007701 mRNA upstream 477939 14789022 ~ 14813063 (-) True XLOC_004040
TCONS_00007703 mRNA upstream 604697 14915780 ~ 14924138 (-) True XLOC_004043
TCONS_00007689 other downstream 826110 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007673 other downstream 1552622 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007664 other downstream 1617206 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 1687130 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 1717601 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007741 other upstream 1706800 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 1709846 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 1747108 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007751 other upstream 1816299 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007758 other upstream 2021741 16332824 ~ 16336886 (-) False XLOC_004066

Expression Profile

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