XLOC_004030 (si:ch211-1a19.2)


Basic Information

Item Value
gene id XLOC_004030
gene name si:ch211-1a19.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 13605623 ~ 13611132 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007690
GTCAGCTTTATAAGGGAGTCAACACTGAAGCAAATAAAGCTTTACTggctccagaagaaaaattattttagacATTAAATAAGACATTTAAAGGAAATAAAAATCAACACAACAAAAATGAATAAGGACAGAAACCCAATTAGTTTGATCGCCATTATTGTCTCTTTTCTGCTAAGTTACAGCATAGCTTTAGGTGAAAAGGACCAGATGAACCAGATGTTTAGCAGAGGACTTCGACTTATTGTAGAGGTTCCACGTGTCCATGTTGAACATTTGATGATCCCGAAGGTGCATGTTCTTCTACCTGCTGGAGTTGAGAAGTGGCGCTCAAACAAAGTAACTCTTGCATGTGTCATTACTGGATTACAAACTAAAGGCGTGAAAATCACATGGAAGGTAAACGGAGCAACAGGTTTAAAAAAGCATGTCAGTTCTCCTCAAGTGCACAAAGGGCCCGCAGGTACGTTCTCTGCTGTGGGACTGTACTCAGTTCTTGCTCATAATTGGAGTCATGAGAATGTGTATAGGTGTGAGGTGTCATACAAAGGaccattttattataaaaaggcAGAGTCGTCTCCTTGCAGTCCTGCTGAGAGACTGTAACTGCGTCTATTGTTGGAGAGTCTCAGATAAGAACCATCAAAAATGAGATCTATATGTTGACTGCTGAGCTGGAGGTTGTATTTCACATAAACTTTTGAAAGTAATACATTTCAATATGGAGTTACTCTCCAAAAAAGCAACTAGTTGTTTCagttgtttacttttttaatgtaagtaatgcgttatgttaattttgagttactttttcgttacctggctgaggcttgatttttcttttttctttttttaatagctctttaattaacaacacactgtacaaCCTTCATTTACCATTAAAAaataggataatgttatcttctgacAACTTCTTGACTCCAGATCTATACATGGAGaatataaaaattaatgaaaatataagGCAATGTGTTTGcttcttttgtactttttttttattatgagttAAGTAATATCACTGTgcattgagacaatccccttttccatttctttaatgcattcaaaataatgagaagACTTCCATCATAGATTTGTAGGTCTTTTTATTCTGTTCCTGCAGGAATCGCATTCTCTCATTGAATCTTTGATTCAAGGTGATTACGTAAAATTTAGtacagcaatttatttttttaaaagttaattgaTTAATCTAAACTCtgacacagtttttttttaaagaattcaaatattatctttttttaagtaatgtgtcgtacttgttacttagaaatgTAATACTATTACGGAACTTTTGTCACTTGTGATGCATTAACCCAACAATGCATCAAAAAgtctat

Function

symbol description
si:ch211-1a19.2 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080303-4 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000076148

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007690 True 1379 mRNA 0.34 3 13605623 13611132

Neighbor

gene id symbol gene type direction distance location
XLOC_004029 BX530062.1 coding downstream 122836 13482671 ~ 13482787 (-)
XLOC_004028 mast3b coding downstream 264140 13280248 ~ 13341483 (-)
XLOC_004027 elovl1b coding downstream 453099 13094179 ~ 13152524 (-)
XLOC_004026 chrna4b coding downstream 607223 12982260 ~ 12998400 (-)
XLOC_004025 txlng coding downstream 803500 12782296 ~ 12802123 (-)
XLOC_004031 sid1 coding upstream 4883 13616015 ~ 13618412 (-)
XLOC_004032 CR555295.1 coding upstream 187321 13798453 ~ 13800802 (-)
XLOC_004033 tmem259 coding upstream 460557 14071689 ~ 14102158 (-)
XLOC_004034 NA coding upstream 536531 14147663 ~ 14148426 (-)
XLOC_004035 NA coding upstream 697765 14308897 ~ 14311237 (-)
XLOC_004019 CR450764.8 misc downstream 913932 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 983856 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 1014327 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 1092361 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 1105361 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 2516250 16127382 ~ 16127678 (-)
XLOC_004024 CR450764.5 non-coding downstream 849348 12756143 ~ 12756275 (-)
XLOC_003997 NA non-coding downstream 1114344 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding downstream 1140214 12430155 ~ 12465409 (-)
XLOC_004002 NA non-coding downstream 1141137 12463700 ~ 12464486 (-)
XLOC_004036 NA non-coding upstream 819790 14430922 ~ 14432200 (-)
XLOC_004038 CR550307.1 non-coding upstream 1082349 14693481 ~ 14695864 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_07580256_07582183 NA coding CI01000051 null 7580241 ~ 7582183 (-)