RNA id: TCONS_00007690


Basic Information

Item Value
RNA id TCONS_00007690
length 1379
RNA type mRNA
GC content 0.34
exon number 3
gene id XLOC_004030
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 13605623 ~ 13611132 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCAGCTTTATAAGGGAGTCAACACTGAAGCAAATAAAGCTTTACTggctccagaagaaaaattattttagacATTAAATAAGACATTTAAAGGAAATAAAAATCAACACAACAAAAATGAATAAGGACAGAAACCCAATTAGTTTGATCGCCATTATTGTCTCTTTTCTGCTAAGTTACAGCATAGCTTTAGGTGAAAAGGACCAGATGAACCAGATGTTTAGCAGAGGACTTCGACTTATTGTAGAGGTTCCACGTGTCCATGTTGAACATTTGATGATCCCGAAGGTGCATGTTCTTCTACCTGCTGGAGTTGAGAAGTGGCGCTCAAACAAAGTAACTCTTGCATGTGTCATTACTGGATTACAAACTAAAGGCGTGAAAATCACATGGAAGGTAAACGGAGCAACAGGTTTAAAAAAGCATGTCAGTTCTCCTCAAGTGCACAAAGGGCCCGCAGGTACGTTCTCTGCTGTGGGACTGTACTCAGTTCTTGCTCATAATTGGAGTCATGAGAATGTGTATAGGTGTGAGGTGTCATACAAAGGaccattttattataaaaaggcAGAGTCGTCTCCTTGCAGTCCTGCTGAGAGACTGTAACTGCGTCTATTGTTGGAGAGTCTCAGATAAGAACCATCAAAAATGAGATCTATATGTTGACTGCTGAGCTGGAGGTTGTATTTCACATAAACTTTTGAAAGTAATACATTTCAATATGGAGTTACTCTCCAAAAAAGCAACTAGTTGTTTCagttgtttacttttttaatgtaagtaatgcgttatgttaattttgagttactttttcgttacctggctgaggcttgatttttcttttttctttttttaatagctctttaattaacaacacactgtacaaCCTTCATTTACCATTAAAAaataggataatgttatcttctgacAACTTCTTGACTCCAGATCTATACATGGAGaatataaaaattaatgaaaatataagGCAATGTGTTTGcttcttttgtactttttttttattatgagttAAGTAATATCACTGTgcattgagacaatccccttttccatttctttaatgcattcaaaataatgagaagACTTCCATCATAGATTTGTAGGTCTTTTTATTCTGTTCCTGCAGGAATCGCATTCTCTCATTGAATCTTTGATTCAAGGTGATTACGTAAAATTTAGtacagcaatttatttttttaaaagttaattgaTTAATCTAAACTCtgacacagtttttttttaaagaattcaaatattatctttttttaagtaatgtgtcgtacttgttacttagaaatgTAATACTATTACGGAACTTTTGTCACTTGTGATGCATTAACCCAACAATGCATCAAAAAgtctat

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0050871 positive regulation of B cell activation biological_process
GO:0006910 phagocytosis, recognition biological_process
GO:0006911 phagocytosis, engulfment biological_process
GO:0042742 defense response to bacterium biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0042571 immunoglobulin complex, circulating cellular_component
GO:0034987 immunoglobulin receptor binding molecular_function
GO:0003823 antigen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080303-4 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDART00000113055

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007671 lncRNA downstream 864487 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007672 lncRNA downstream 864487 12739176 ~ 12741136 (-) True XLOC_004023
TCONS_00008772 lncRNA downstream 1114344 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00007692 lncRNA upstream 187321 13798453 ~ 13800802 (-) False XLOC_004032
TCONS_00008775 lncRNA upstream 187360 13798492 ~ 13800113 (-) False XLOC_004032
TCONS_00007693 lncRNA upstream 188544 13799676 ~ 13800802 (-) True XLOC_004032
TCONS_00008776 lncRNA upstream 536531 14147663 ~ 14148426 (-) True XLOC_004034
TCONS_00008777 lncRNA upstream 697765 14308897 ~ 14311083 (-) False XLOC_004035
TCONS_00007687 mRNA downstream 264140 13280248 ~ 13341483 (-) False XLOC_004028
TCONS_00007688 mRNA downstream 264572 13282592 ~ 13341051 (-) True XLOC_004028
TCONS_00007682 mRNA downstream 453099 13094818 ~ 13152524 (-) False XLOC_004027
TCONS_00007681 mRNA downstream 453099 13094818 ~ 13152524 (-) False XLOC_004027
TCONS_00007684 mRNA downstream 453312 13095050 ~ 13152311 (-) False XLOC_004027
TCONS_00007691 mRNA upstream 4883 13616015 ~ 13618412 (-) True XLOC_004031
TCONS_00007694 mRNA upstream 460557 14071689 ~ 14102158 (-) False XLOC_004033
TCONS_00007695 mRNA upstream 461650 14072782 ~ 14102131 (-) True XLOC_004033
TCONS_00007697 mRNA upstream 1055934 14667066 ~ 14669026 (-) True XLOC_004037
TCONS_00007699 mRNA upstream 1160776 14771908 ~ 14813029 (-) False XLOC_004040
TCONS_00007689 other downstream 122836 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007673 other downstream 849348 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007664 other downstream 913932 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 983856 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 1014327 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007741 other upstream 2406751 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 2409797 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 2447059 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007751 other upstream 2516250 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007758 other upstream 2721692 16332824 ~ 16336886 (-) False XLOC_004066

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000051_07580256_07582183.mRNA True 456 mRNA 0.47 2 CI01000051 7580241 ~ 7582183 (-)