RNA id: TCONS_00007687


Basic Information

Item Value
RNA id TCONS_00007687
length 7605
RNA type mRNA
GC content 0.45
exon number 26
gene id XLOC_004028
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 13280248 ~ 13341483 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGACTCGTCTCCCCTCTTTTCAGCGAGATGGTACATTCTAAGCTTATCAACCGGCAATCAATCAACACTAGAGAAACAACCACAACACACACAGCATCTTTACTCTTAAACATGGGCTCACACCTGCTACCCGCTGTGAGCCGCATTTcggaaagtaaataaatgacttTCTGCCACCTCGAGACGATATCAAAAGAAGCTGTGAACAGAATGTGAACGTTTGAACTTTTAGCAAGTTGCACGACGAGTCCAGGCAAACAGCAGCGTGGCACACAAAGAGCAGATATGAGCCGCCGCGAGCAAGACGCGGTTTCCCGGACGAGTTTATCCAGTCAAGAGGCGGACTCATGAATCGGAAGAGGTTCGACTCATTGTTCTGGTTCTGTTCCTCGGTGTCGCTTGGACAGTTGACACTCTAATCGTATGCGATTATGTCTGATCCAAGTTCCTGGAGCGCGTTGCCTGGCAGCAGCAAAGCTCATTTTGTTACAGGCGTGATGCTCAAGCGATCCAAAAGCTGTCGCAGCAGTAATAGAAAGAGCCTTGGTGTTGGAACACCATCGCCCACCCGCCCTCTTTCGCCTCTGTCCGCCCACACAGCTGCCAGCAGCCCTCTGGACAGCCCACGAAATGTGTCCACTGCTATTTGCTCTCTCAACTTCCCTTTCGCCCGCAGAGCGGAAGGGAGACGATGGTCTCTGGCTTCGCTTCCATCCTCAGGTTACGGGACCAATCCTCCCAGCTCAACAGTCTCAGTATGTGCCTCAtCATCTTCCTCATCTCAAGAACGACTCCACCAGCTTCCATACCAGCCCACACAGGACGAGCTTCATTTCCTGTTCAAACACTTCCGAAGTTCGGAGAGCATGACTGATGAAGATGGACGACCCTCCACGTTTATAAGACCCCGGTCACGTAGCCTTAGCCCTGGACGAACTGGTGGCTCATTTGATAATGAAATTATAATGATGAATCATGTCTATAAGGAACGCTTTCCAAAGGCCACCGCTCAGATGGAGGAGCGTTTGCTGGACATCATCAGGCACTTTTCTCCAGACAGCACCCTGCCGCTGGGAGATGGAGTCCTGGGATTCATCCAGCACCAGTTGGTGGAGTTGGCAAGGGACTGTCTGGATAAATCCCAGAAGGGCCTGATTACATCTCTGTACTTCATAGAGCTGCAAGATAAACTGGAAAAAATGCTGCATGAGGCGCTGGATCGTTCAGAAAGTGAGGAGGTCTCCATAATCACTCAGCTGATCAAGAAGATCCTCATCATCATCTCTCGGCCTGCACGTCTGCTGGAATGTCTGGAGTTTGACCCTGAAGAATTCTACCATCTTCTAGAAGCTGCAGAAGGTCATGCCAAAGTTGGCCAGGGCATCAAAACAGACATTCCTCGCTATATTATCAGTCAACTTGGACTCAACTGGGATCCACTTGATGAAGTTGTGCAACTAGAGGAACAGTTTGACTCTGGGCCCACGTTGACGGTTGATTCTCAAGAATCTGCAGAGAATAAAGTTTCTACACCACTACGGAGAAAACCACTGGAGAGTGATTTTGAGACCTTAAAACTCATCAGTAATGGGGCTTACGGGGCTGTGCATCTGGTAAGGCATAAAGAAACTCGCCAACGATTTGCAATGAAAAAAATCAACCGACAAAACCTAATACTGCGGAACCAGATCCAGCAGGTGTTTGTGGAGAGAGACATCCTGACGTTTGCAGAGAATCCGTTTGTGGTCAGCATGTTCTGCTCCTTCGAGACACGGAGACATTTGTGCATGGTCATGGAGTATGTGGAAGGTGGTGACTGTGCTACTTTACTGAAGAACATGGGTCCGCTTCCAGTGGATATGACTAGAATGTATTTTGCAGAGACTGTTCTGGCGTTGGAGTACCTTCACAGTTACGGCATTGTGCACCGAGATCTCAAACCAGACAACCTCTTGATTACTTCAATGGGACACATTAAACTTACTGACTTCGGGCTTTCCAAAATCGGACTTATGAATATGACGACCAATCTGTACGAGGGCCACATTGAGAAGGACACCAGAGAGTTTATCGACAAGCAGGTTTGTGGCACTCCAGAGTACATTGCCCCAGAAGTGATCCTTCGACAGGGCTATGGAAAGCCAGTGGACTGGTGGGCCATGGGAATCATCCTGTATGAGTTTCTTGTGGGATGTGTTCCGTTCTTTGGAGATACACCAGAAGAGCTTTTTGGGCAGGTTGTCAGTGATGAGATTATCTGGCCAGATGGAGATGATGCCCTGCCTGTAGACGCCCAGGACATGATCACACGATTACTAAATCAGAGCCCGCTGGAGAGACTTGGAACAGGTGGAGCTCCAGAAGTAAAGCAGCATATGTTCTTCAGTGGTCTGGACTGGAACGGACTCCTTCGTCAGAAAGCCGAATTCATCCCTCAGCTGGAGGGTGAAGATGACACTAGTTATTTTGACACACGCTCTGAACGCTACCATCATTTGGCTTCTGATGAGGATGAAGAAACTAATGATGAAGAGTCTTCCTTGGAAATACGACGGTTTTCTTCTTGGTCAAATCGTTTTAGCAAGGTGTACAGCAGCACAGAGCACCTGGCAACCCCATCCAACCTGAGTTTTTCCTCAGACCGCAGTCATAGTGAAGAGATAGAGGACCGGGCAGACACTCACTACCATGGAGAGATCCAACGACAGGCCTCCACTGGAGACAAGAGGCTTTCGGCGCAGAGGGCAAGcctGCGCCCTCGAACCTCCTCCAGCTCTTCTCAGCCTGAGCGAGCTGTAAGTCCTCTAGTGGTGAGCAGCACACACAGCCTGGAGGCCATGCCTCGTTTCGCTCTGTCCACTGATGATGAAGCTGAAGTTGTCGTTTCTAACCTGCGAAGAATCAGGCTACGTAGCAACAGCACAGGAACGAAACACTCGTCTCCAAGGGAACAAGGGGGTCCTCCATGCTTTGGAAACCAGCTGGAGACACCCGACAAACAGCGACTCTCACCAGGACGCAAAGTCCCCAAATCCGCATCAGTGTCCACTCTCTCACTCATCATTACTCCAGATGACGGGAGTGGCAGCCTACAGGGACGCTCCATATCCCCTCGTTCATTTTCCTCCAATCCCTCATCGCGAGACTCCTCCCCCAACCGAGACCTGTCGCTCAGCATCAGCAGGCTCCGTCCCCCAATCATCATCCACAGCTCTGGGAAGAAATTTGGCTTCACGCTACAGACTATTCGTGTTTACATGGGGAACAGTGACATCTACACCATACACCACATGGTCTCGGGTGTGGAGGAGAGCAGTCCTGCCCATGAGGCTGGACTGCGAGCAGGTGATCTGATCACTCATGTGAATGGAGAATCTGTGCAAGGTCTGGTGCACACAGAGATGATGGAGCTTCTCCTGAAGAGTGGTAACCAGGTGACTCTGCAGACTATCGCACTGGAGGACACGTCTATAAAGATCGGTCCGGCACGCAAGAGCAGATGTAAAGGAAAGATGGCCCGCCGCTGTAAAAGCAGATGGAAGGACAATAAGGACCGGAGGCGCAACATGCTAAAGAAGCTGTCCAAACAGAGCACAGTTATGCACAGCAGCCGCAGCTTCTCCTCTGGCCTGCATCACTCTGTGTCCTCCAGCGAGAGTCTGCCAGGCTCTCCTACACACAGCCTTTCTTCAGGACCCACAACACCCTGCCGGAGCCCCGTTCCTGACCACACCACTGATACCGGCCTGCCCCAGAACGCCTCTCCATGCTCCAGCTCTCCGAGTTCACCGGCAGTTCAGATGCGTCCCAGTTCACTGCACGGACTCGGGTCTAAACTTGGCAACCAGCGGTACACTAAAGTGGGCAGACGGAAGTCCACCAGCAGCATCCCTCCCTCTCCTCTGGCCTGCACCTCCTCTCCACAGGCTCTGTCACCTCAGCGCTCCCCTTCACCATTACCCAGCATTTCCAAAACCCTCCACTCCTTCCACGGCAAAACCCTCTCACCCCCCACCATCATTCGGCATGTGGTCAGACCCCGAAGTGCAGAACCTCCACGTTCTCCTTTGCTAAAGAGAGTCCAGTCTGCAGAGAAACTTTCAGGGGCGTTATTCGCTGACAAAAAGCCACATGCGGCCCGTAGACACACCCTTGAGGTCCCTCATTGTGAGCTGGACGTCTCTGGAGACGCTGAGGGAGAGGTGGCCTGCGGTTCGGTATATACAACAGATCACGGCAGGCTTGGTGGATACTTGTGTGCCCAAAGATTAAGGGACTGGCCCAGCGAACGCATGGAGCAGATTGTGGTCATGCGTAAACTCAATCTGTCTGAACGCAGAGATTCCTTCAAGAAGCAGGAAGCTGTGCAGGAAGTGAGCTTTGATGAGCCGGATGCTCCACAGACTTCCGCTCAGACAGGCACATCTACTGGCACGCGGCCCAAGCATATAATCGGCGAATCGCAGTCGGAGGAGGAATGTGTGGCAAGAAGAAATCCGTTGGTTCCTCAGATTGCTGTGCAGGGATCTGAGAGCGAGGAAGCGGATGATTGGAGGCTTTGCTCAGATGAAGATGAAGACGAGGCTGAGGAAAACGTGTTGCTTACTCAGAATCAGGGTGAGCCTCGGATCGACACCGCTAACATTTCCTCGGTTGCTACATGTGAAGCTGCTGGAGTGATTACAGTTACAGCAAAGCCAGAAAATCATCCGAATCCTGAAAAAAGCAAACTGATAAACAGATAAATGAGTCAAGGACTGTTACAGTACGTGGTTCTCCATTTGGACTCCCCGACGCACCTGCTTGCACATTTGAGCAGCACAGAATTCCAACGATTACAGAGTGAAGTATTTTATTAGCATGTAAATGGAAGTAAGCTAGTCTTACGCAGGGaataattaagcttttttttatttattaatatttattagagTACTGTTGGCCAAAAAGAAAACTAAAGTACGGTTGTTAGTCTGGTTTTCTCACTTTCTGTGAACCTGTCGAGAAGGGAAACTGAATGATTTTCTATGAAAATGTGCAAAAGCATtgaattcatttcattttccaagAGCTTTTCATTTTTGCACAGACTTTGTGTACGGTTTATAAAGCTGCGAGTTCAAATGCTATTTCAATGGAATAGTTAAGTGGTTCTTTTCATGCATTATTCCACATTCTCAAAGTGGTTCCAGAGCATTTGCAATCATCCATGCGTAAAGACGATAACAAAAATACTGTGGAAAGCCAAAAAGGTACTTGAAATCTGGTAAATGTTGGTCaaggtgtttaaaaaaacagGAGAATTTATTGTCTAAATGACTATCTTATATCAAACCAAATAgatgttttagatattttttgttacctgttttttattaaaatgaattaatgaagttTAAGAACAAATTCTATGATTATAAATAGGGTAacaatactggaatttgataccaatcggtactaaaattttaaaaacgtccatttcctgtgAATATTTGAGCGCTGTGAAGCCTGTTCTTTAAACatcactgatttgccattgtgttcacatgcctaacagaaatgactgtgattggtcgtgaaggtcatcggttcaccgaactcactgctGCTTAGTGAGTGTAATCACAGGTACAGGGACACTAGAGCATTTCAAAGACACGTCGATCAGCTGTATTGACTATAAGTTGACATACTAGAGATCTGCTGATAAATCACGGCTTTAAAACTCTCCAGTGtctctgtatctgtggttacacacaataaacagcagtgagttcggtTAACTGATAAACTTCACGGCCaaccacagtcatttctgttgagcacgtgaacacaatggcaatccAGCACTGTTGAAGAATGCATTccacagtgcttaaatgttagcaggtaATGGAAGTATTTAAAATTCCAGTACTGATTGGTAtaaaattccagtatcatgacaaccctaattttaaataattattttaatttatatttaaaatgcagtaaattcCGATCATGAGAAGACAACTTAAAGATGTGAAGATCTTCTTAAATCCAAACAAAAACgttcaattttttttaaggtaaaacttTTAACGCACAATTAATTGATAGTTTCTCAAATTGTTCCTCCTGTATGTTTTTTTCACCCAGCTTTGCATGTTCAGTTTACTTGCAACCTAAAAATGTTCCCATCACAGGGTTTAAGGTGAATGGAACCTATGACTTTTCTAAGAGATAGTTAAGCATGCAGCCTCATGCTTCATGCTATCTAAAAACTTACACTGAATAACCGCACAAAAAACAAACCACATCATCACGAGCTTTCCGCGGACCGTTGGCCTGTCAGGAGTTCTCACAAGCTTTTGTACTTGggataatgtttacattttttatatatttggattatattttatatatttggacgGTGTAAAGGAATCTGTATGGCCTGTTTTAACTTGATTACAAATGAGTCAGTGGGTTGAGGTTTCAGCTTGATCATTGTTTTAAAGTTGAACGTGATGTCTTTGTTTAATAGGCAAATCTCACCAACACTGCACACATCGGACTGGATGTTTGTGTTTAAATGCATGAGTATCTTCCAAAACGTTTTTTCAAAAGACgttgttatttgtatttaataggacagtatttttattgcatttaaagtgCATGAATGATGTCAGAACTTTGTTAATATTGGACTTTCAGAAGAACAGCACATTTCTGTATGGAATTTTTAAGGTTTATTGTTAATTGCGACTTTTGTGTTACTTTATGCATCAGGCTACTGTAGTCGTAAGCACTTTTTGTGACACAAACTGGTGTAATTTTTTAGTAGGCCGTATTTTTCCCGCCTGTCAGACAGCCGATTGCATGCTGCATGTTAAGTGAATATACAGTGCACGTTGACATGGCGACCTGAGTGCAATATGTGTTTAATGGTCAAGTATAATCAAGCATTTgaattacagtaatgttactaaAAGCCTAATGTTATGCAGACCCTGTTGTGACATTTTATCCAATCTGTAATCACAGACTTTAGTGGATGGATTGTTTGTCATGTGGATCTGGAGCATGTTCAGATGAACAGGGTCACTACTGTTACATTCACACTAAAGCTTCACAGCACTCAAAAccatcatatcatatcatatatatatatatatatatatatatatatatatatatatatatatataatgtccaAAAATGGCCCTGTGTCCGAAaacagtgtcctgcagagttgaACTCCAAACtagtttaattgtgtgtgtgtgtttgtgtgtgcgtgcatgcgtgcgtgcatgcgtttAATTAGTGACcgaactaaaatatgtaggacactggctgtccagggccgagtttggacacccctgataaaGACTTGTGTTTATAtggatatatacatacatacatacatagatgcATACAtccacgcgcacacacacactgctctgctGATGGTTTCTtccatttttttccctaattgTCAAGAACTACAAATTATTGGTatgtgtttgtaaaaaaaatacttttataaatattttttaatgttttaactgtTTGTCAGATGATGTTTTGTAATAAATCATTGACTGGTTAAGAGGGAA

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-111209-1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Orthologous to human MAST3 (microtubule associated serine/threonine kinase 3).

Ensembl:

ensembl_id ENSDART00000164978

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007671 lncRNA downstream 539112 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007672 lncRNA downstream 539112 12739176 ~ 12741136 (-) True XLOC_004023
TCONS_00008772 lncRNA downstream 788969 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00007692 lncRNA upstream 456970 13798453 ~ 13800802 (-) False XLOC_004032
TCONS_00008775 lncRNA upstream 457009 13798492 ~ 13800113 (-) False XLOC_004032
TCONS_00007693 lncRNA upstream 458193 13799676 ~ 13800802 (-) True XLOC_004032
TCONS_00008776 lncRNA upstream 806180 14147663 ~ 14148426 (-) True XLOC_004034
TCONS_00008777 lncRNA upstream 967414 14308897 ~ 14311083 (-) False XLOC_004035
TCONS_00007682 mRNA downstream 127724 13094818 ~ 13152524 (-) False XLOC_004027
TCONS_00007681 mRNA downstream 127724 13094818 ~ 13152524 (-) False XLOC_004027
TCONS_00007684 mRNA downstream 127937 13095050 ~ 13152311 (-) False XLOC_004027
TCONS_00007685 mRNA downstream 128033 13103850 ~ 13152215 (-) False XLOC_004027
TCONS_00007686 mRNA downstream 128407 13103853 ~ 13151841 (-) True XLOC_004027
TCONS_00007690 mRNA upstream 264140 13605623 ~ 13611132 (-) True XLOC_004030
TCONS_00007691 mRNA upstream 274532 13616015 ~ 13618412 (-) True XLOC_004031
TCONS_00007694 mRNA upstream 730206 14071689 ~ 14102158 (-) False XLOC_004033
TCONS_00007695 mRNA upstream 731299 14072782 ~ 14102131 (-) True XLOC_004033
TCONS_00007697 mRNA upstream 1325583 14667066 ~ 14669026 (-) True XLOC_004037
TCONS_00007673 other downstream 523973 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007664 other downstream 588557 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 658481 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 688952 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007648 other downstream 766986 12512966 ~ 12513262 (-) True XLOC_004008
TCONS_00007689 other upstream 141188 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007741 other upstream 2676400 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 2679446 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 2716708 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007751 other upstream 2785899 16127382 ~ 16127678 (-) True XLOC_004063

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000051_07410144_07439528.mRNA True 4923 mRNA 0.51 24 CI01000051 7409463 ~ 7439528 (-)