RNA id: TCONS_00008772


Basic Information

Item Value
RNA id TCONS_00008772
length 272
lncRNA type read_through
GC content 0.46
exon number 4
gene id XLOC_003997
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12429383 ~ 12491279 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCTGAGGACACTCCAGAGTAGCAGGTCTACATGTTCTGTTAAGAGACTGGATTCTGAGAGCGAGATCCTGTGAAGTGTTCATCAAAGCTGAAGAGAAGAACTGGATCTGTGTTCAGCAACTGTCCGGAGTTGGTGGATGTTCTGTCCGAGCCTGATTAAAAGAGTGATAAACGGTGAGTCCAGATGCTACAGACACAGAAAAAGGTGCAGCAATGGAGGAACACAGCAAGCACCTTCCAGGAAGAGCTGGAGAATATTAGAAATAAAGAct

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007602 lncRNA downstream 209414 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00007600 lncRNA downstream 215952 12213149 ~ 12213431 (-) True XLOC_003977
TCONS_00007594 lncRNA downstream 243239 12185854 ~ 12186144 (-) True XLOC_003975
TCONS_00007591 lncRNA downstream 263376 12165723 ~ 12166007 (-) True XLOC_003972
TCONS_00008770 lncRNA downstream 723247 11646506 ~ 11706136 (-) True XLOC_003962
TCONS_00007671 lncRNA upstream 242852 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007672 lncRNA upstream 247897 12739176 ~ 12741136 (-) True XLOC_004023
TCONS_00007692 lncRNA upstream 1307174 13798453 ~ 13800802 (-) False XLOC_004032
TCONS_00008775 lncRNA upstream 1307213 13798492 ~ 13800113 (-) False XLOC_004032
TCONS_00007693 lncRNA upstream 1308397 13799676 ~ 13800802 (-) True XLOC_004032
TCONS_00007629 mRNA downstream 11431 12416065 ~ 12417952 (-) False XLOC_003996
TCONS_00007630 mRNA downstream 11609 12416473 ~ 12417774 (-) True XLOC_003996
TCONS_00007626 mRNA downstream 34701 12392715 ~ 12394682 (-) False XLOC_003994
TCONS_00007627 mRNA downstream 34883 12392813 ~ 12394500 (-) True XLOC_003994
TCONS_00007624 mRNA downstream 49842 12377621 ~ 12379541 (-) False XLOC_003993
TCONS_00007643 mRNA upstream 5901 12497180 ~ 12499116 (-) False XLOC_004005
TCONS_00007644 mRNA upstream 6306 12497585 ~ 12498934 (-) True XLOC_004005
TCONS_00007646 mRNA upstream 18944 12510223 ~ 12512122 (-) False XLOC_004007
TCONS_00007647 mRNA upstream 19349 12510628 ~ 12511941 (-) True XLOC_004007
TCONS_00007649 mRNA upstream 37102 12528381 ~ 12530304 (-) False XLOC_004009
TCONS_00007628 other downstream 33569 12395518 ~ 12395814 (-) True XLOC_003995
TCONS_00007621 other downstream 77828 12351259 ~ 12351555 (-) True XLOC_003991
TCONS_00007616 other downstream 105457 12323630 ~ 12323926 (-) True XLOC_003988
TCONS_00007613 other downstream 139715 12289372 ~ 12289668 (-) True XLOC_003985
TCONS_00007611 other downstream 175227 12253860 ~ 12254156 (-) True XLOC_003983
TCONS_00007645 other upstream 8687 12499966 ~ 12500262 (-) True XLOC_004006
TCONS_00007648 other upstream 21687 12512966 ~ 12513262 (-) True XLOC_004008
TCONS_00007656 other upstream 99720 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007658 other upstream 130239 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007664 other upstream 200116 12691395 ~ 12691691 (-) True XLOC_004019

Expression Profile

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