RNA id: TCONS_00007691


Basic Information

Item Value
RNA id TCONS_00007691
length 563
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_004031
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 13616015 ~ 13618412 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGAAAGTGGCATCACACAGACAGCCAAACTTCAACAGCTCTCAGCCAAGTTCACGTATGACAAAACAATGGATCTTCAAACAAGCTACAACAAAAAGCTGCTTTCACTTCTGTATCTTACACTGCACAGCTTAATATGGAGGACTTCACTGACCATCTCTGTACAGCAGGGGCAAAATGTTACACTGAGCTGCCCACTGATGCCCAACAGCAGCGAGGGGGTTTTGAGCTGGTATAAACAGACTGCTGGACAGGGGTTACGAATAATCCTCTCCTACAACATCACCAACACTTCAAATGTTCGCTATGGCATGGGAATGGACCAGAGCAGATATGCCATCTTAACCAGCGAAGGCTTAAACCCAAGTCACTTTCTGCAAATCATCACAACTTTGAGGAATGACACTGGTACCTATTACTGTGGATTTTCAGACAAACAACAGATGCATATGTTGGACAAAAAGAATGTAGATGCTTAAAAGTTGCATTATATATTATCCTATTTCTCTGTGTAGATGAACTTTATTtatgatgaataaaaataaacatgcttttttaaacta

Function

GO:

id name namespace
GO:0009617 response to bacterium biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-020620-1 Predicted to be involved in response to bacterium.

Ensembl:

ensembl_id ENSDART00000137289

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007671 lncRNA downstream 874879 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007672 lncRNA downstream 874879 12739176 ~ 12741136 (-) True XLOC_004023
TCONS_00008772 lncRNA downstream 1124736 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00007692 lncRNA upstream 180041 13798453 ~ 13800802 (-) False XLOC_004032
TCONS_00008775 lncRNA upstream 180080 13798492 ~ 13800113 (-) False XLOC_004032
TCONS_00007693 lncRNA upstream 181264 13799676 ~ 13800802 (-) True XLOC_004032
TCONS_00008776 lncRNA upstream 529251 14147663 ~ 14148426 (-) True XLOC_004034
TCONS_00008777 lncRNA upstream 690485 14308897 ~ 14311083 (-) False XLOC_004035
TCONS_00007690 mRNA downstream 4883 13605623 ~ 13611132 (-) True XLOC_004030
TCONS_00007687 mRNA downstream 274532 13280248 ~ 13341483 (-) False XLOC_004028
TCONS_00007688 mRNA downstream 274964 13282592 ~ 13341051 (-) True XLOC_004028
TCONS_00007684 mRNA downstream 463704 13095050 ~ 13152311 (-) False XLOC_004027
TCONS_00007685 mRNA downstream 463800 13103850 ~ 13152215 (-) False XLOC_004027
TCONS_00007694 mRNA upstream 453277 14071689 ~ 14102158 (-) False XLOC_004033
TCONS_00007695 mRNA upstream 454370 14072782 ~ 14102131 (-) True XLOC_004033
TCONS_00007697 mRNA upstream 1048654 14667066 ~ 14669026 (-) True XLOC_004037
TCONS_00007699 mRNA upstream 1153496 14771908 ~ 14813029 (-) False XLOC_004040
TCONS_00007700 mRNA upstream 1154186 14772598 ~ 14789918 (-) False XLOC_004040
TCONS_00007689 other downstream 133228 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007673 other downstream 859740 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007664 other downstream 924324 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 994248 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 1024719 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007741 other upstream 2399471 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 2402517 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 2439779 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007751 other upstream 2508970 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007758 other upstream 2714412 16332824 ~ 16336886 (-) False XLOC_004066

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000051_07584669_07585335.mRNA True 713 mRNA 0.41 2 CI01000051 7584355 ~ 7585335 (-)