XLOC_004040 (sgta)


Basic Information

Item Value
gene id XLOC_004040
gene name sgta
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14771908 ~ 14813063 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007699
GCAAATAGAAGCTTCAGTGTCATACGTAACATCATTAGACTGGTTCTCTTCACACATTTCGTTTTGTGAGGTGTACACCTCAGTACAATGGCAGACACAAAGCATATTGCATTCTCCATCATCCAGTTTCTCCGTGACCAGCTGTCCTCTGGGGGTCTGTCATCAGATGCACAAGAAAGTTTAGAAGTTGCTATTCAGTGCTTGGAGACAACATTTGGGATTTCTGTAGATGACCAGAACTTAGCAGTCAGTCAGTCTCTGCCAGAGTTATTTGCTTTTGCAACTAAACAGACTGGTACAACACAAGAAAACACATTTGTAACCACTGGATCACCTTATGAGCATCAGTTAGCAGAGGCTGAGCGTCTTAAAACAGATGGAAATGATCAGATGAAAGTGGAAAACTTTAGTGCAGCTGTGGAGTTTTACTCTAAAGCCATCCAGCTTAATCCTCAAAATGCTGTCTACTTTTGCAACagagCTGCAGCATACAGCAAGCTAGGGAACTATGCTGGAGCTGTTCAAGACTGTGAACGTGCCATTGGAATTGATGCAAACTACAGTAAAGCATATGGACGAAtgggGCTTGCTCTTGCAAGTTTGAACAAATACTCAGAGGCTGTGAGCTATTACAAGAAAGCACTGGAACTGGACCCTGACAATGACACCTACAAAGTCAACCTTCAAGTTGCAGAACAGAAGGTTAAGGAAACACAGCCAAGCACAGCAGGGGGGTTGGGAGGAGTCGATCTGGCTGGTTTGCTGAGTAACCCTGGGTTCATGAATATGGCATCTAATTTAATGAACAACCCTCAAGTGCAACAACTTGTATCAGGTATGATGTCTGGGTCTTACAGTCCCGTAAGTAGTGCCACCTCACCAACAGCTGCTGGAGCAGGAGGTGGTGGTGCCAATGACCTCTCCAGCCTCATACAGGCTGGACAGCAGTTTGCACAACAAATGCAACAGCAGAATCCTGAGCTTATTGAACAGCTGAGGAGTCAAATGCGCAGCCGACCTCCCAGTAGTGCTGGCAATGATGAACCCTGACACTCCTCATGaATTGAACACTACTTCATGGACACATGGAAGATGTGctactttttttaaagatataccTTGTTCCTACAAGTCTGGAACAAGACCAATTTATccatctgtaaaaataaaattataaattaaaaaatgggTTCCCACGGCCCATTATACCAAATCAGTATGTACACATATTGTTTTGAAAGTGAAGAAATGTATGATCAAATGAAATGTCACACTACCATTATTTTCTCATATAGTAATCCAGGTTAATTGACTGCAATTGTTACCTCAATGATATAATTCAGTTTTGCTGTTAACACATCAGTGATTCATCTGTCTAGTGACAAGTCTCTGTCTGATCTTATAGGGGTCTTACTGGGAGCATGCAGTCTAAACACTTACAAATGTCGGATTTCAAATATGAATTTGAGGCAAATTGTCATGCTTTATAAATGTTTGCCATGCTTGCAATGAATGAGATTGGACAATTGCCATTGCCCTAATTAATAGCTGTGACTCTTAGTTTGTTCTGATTTcttttgaaataaatttttttttgtc
>TCONS_00007700
TCAGTACAATGGCAGACACAAAGCATATTGCATTCTCCATCATCCAGTTTCTCCGTGACCAGCTGTCCTCTGGGGGTCTGTCATCAGATGCACAAGAAAGTTTAGAAGTTGCTATTCAGTGCTTGGAGACAACATTTGGGATTTCTGTAGATGACCAGAACTTAGCAGTCAGTCAGTCTCTGCCAGAGTTATTTGCTTTTGCAACTAAACAGACTGGTACAACACAAGAAAACACATTTGTAACCACTGGATCACCTTATGAGCATCAGTTAGCAGAGGCTGAGCGTCTTAAAACAGATGGAAATGATCAGATGAAAGTGGAAAACTTTAGTGCAGCTGTGGAGTTTTACTCTAAAGCCATCCAGCTTAATCCTCAAAATGCTGTCTACTTTTGCAACagagCTGCAGCATACAGCAAGCTAGGGAACTATGCTGGAGCTGTTCAAGACTGTGAACGTGCCATTGGAATTGATGCAAACTACAGTAAAGCATATGGACGAAtgggGCTTGCTCTTGCAAGTTTGAACAAATACTCAGAGGCTGTGAGCTATTACAAGAAAGCACTGGAACTGGACCCTGACAATGACACCTACAAAGTCAACCTTCAAGTTGCAGAACAGAAGGTTAAGGAAACACAGCCAAGCACAGCAGGGGGGTTGGGAGGAGTCGATCTGGCTGGTTTGCTGAGTAACCCTGGGTTCATGAATATGGCATCTAATTTAATGAACAACCCTCAAGTGCAACAACTTGTATCAGGTATGATGTCTGGGTCTTACAGTCCCGTAAGTAGTGCCACCTCACCAACAGCTGCTGGAGCAGGAGGTGGTGGTGCCAATGACCTCTCCAGCCTCATACAGGCTGGACAGCAGTTTGCACAACAAATGCAACAGCAGAATCCTGAGCTTATTGAACAGCTGAGGAGTCAAATGCGCAGCCGACCTCCCAGTAGTGCTGGCAATGATGAACCCTGACAC
>TCONS_00007701
ACGTGACTCTAGGAAACTGTCGCATGCGCAATACGCAAATAGAAGCTTCAGTGTCATACGTAACATCATTAGACTGGTTCTCTTCACACATTTCGTTTTGTGAGGTGTACACCTCAGTACAATGGCAGACACAAAGCATATTGCATTCTCCATCATCCAGTTTCTCCGTGACCAGCTGTCCTCTGGGGGTCTGTCATCAGATGCACAAGAAAGTTTAGAAGTTGCTATTCAGTGCTTGGAGACAACATTTGGGATTTCTGTAGATGACCAGAACTTAGCAGTCAGTCAGTCTCTGCCAGAGTTATTTGCTTTTGCAACTAAACAGACTGGTACAACACAAGAAAACACATTTGTAACCACTGGATCACCTTATGAGCATCAGTTAGCAGAGGCTGAGCGTCTTAAAACAGATGGAAATGATCAGATGAAAGTGGAAAACTTTAGTGCAGCTGTGGAGTTTTACTCTAAAGCCATCCAGCTTAATCCTCAAAATGCTGTCTACTTTTGCAACagagCTGCAGCATACAGCAAGCTAGGGAACTATGCTGGAGCTGTTCAAGACTGTGAACGTGCCATTGGAATTGATGCAAACTACAGTAAAGCATATGGACGAAtggg

Function

symbol description
sgta Predicted to enable molecular adaptor activity. Predicted to be involved in positive regulation of chaperone-mediated protein folding; posttranslational protein targeting to endoplasmic reticulum membrane; and ubiquitin-dependent ERAD pathway. Predicted to be part of TRC complex. Predicted to be active in membrane. Orthologous to human SGTA (small glutamine rich tetratricopeptide repeat co-chaperone alpha).

GO:

id name namespace
GO:1903646 positive regulation of chaperone-mediated protein folding biological_process
GO:0006620 posttranslational protein targeting to endoplasmic reticulum membrane biological_process
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0072380 TRC complex cellular_component
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0060090 molecular adaptor activity molecular_function

KEGG:

id description
ko00550 Peptidoglycan biosynthesis
ko01003 Glycosyltransferases
ko01011 Peptidoglycan biosynthesis and degradation proteins
ko03110 Chaperones and folding catalysts
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030131-8811 Predicted to enable molecular adaptor activity. Predicted to be involved in positive regulation of chaperone-mediated protein folding; posttranslational protein targeting to endoplasmic reticulum membrane; and ubiquitin-dependent ERAD pathway. Predicted to be part of TRC complex. Predicted to be active in membrane. Orthologous to human SGTA (small glutamine rich tetratricopeptide repeat co-chaperone alpha).

Ensembl:

ensembl_id ENSDARG00000019941

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007699 False 1599 mRNA 0.41 12 14771908 14813029
TCONS_00007700 False 974 mRNA 0.46 10 14772598 14789918
TCONS_00007701 True 618 mRNA 0.43 6 14789022 14813063

Neighbor

gene id symbol gene type direction distance location
XLOC_004039 NA coding downstream 12820 14754905 ~ 14759088 (-)
XLOC_004038 CR550307.1 coding downstream 76044 14693481 ~ 14695864 (-)
XLOC_004037 adora1a coding downstream 102882 14667066 ~ 14669026 (-)
XLOC_004036 NA coding downstream 339708 14430922 ~ 14432200 (-)
XLOC_004035 NA coding downstream 460671 14308897 ~ 14311237 (-)
XLOC_004041 CU019562.1 coding upstream 14311 14827374 ~ 14829324 (-)
XLOC_004042 NA coding upstream 60266 14873329 ~ 14874130 (-)
XLOC_004043 si:dkey-6d5.1 coding upstream 102717 14915780 ~ 14924138 (-)
XLOC_004044 elavl1b coding upstream 142421 14955484 ~ 15001712 (-)
XLOC_004045 CR550302.1 coding upstream 205075 15018138 ~ 15019527 (-)
XLOC_004019 CR450764.8 misc downstream 2080217 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 2150141 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 2180612 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 2258646 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 2271646 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 1314319 16127382 ~ 16127678 (-)
XLOC_004034 NA non-coding downstream 623482 14147663 ~ 14148426 (-)
XLOC_004048 NA non-coding upstream 498318 15311381 ~ 15313599 (-)
XLOC_004050 NA non-coding upstream 943663 15756726 ~ 15761871 (-)

Expression


Co-expression Network