XLOC_004042


Basic Information

Item Value
gene id XLOC_004042
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14873329 ~ 14874130 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008781
GACCAAGAATATACATTGTGGGAGACAGCTACATTCACCGTGGGGAAAAAAAGAGCGAGAGAGATGACTGGGAGAAACCTGGGACTAAATGCCCTCATCCAGTGGTTTGGTAGGGGAGGGATGATTTGGAGAAACGTCCTCCCGTACTTTGAACAGTGCCTCCAAGGAAGAGCTGTGCCAGACATTCTCTTGGTTCACTGTGGCGGAAACGATCTTGGAAAAACCAAGAGTATCCATCTTGCCGCAAGAATAAAGCAGGACTTGCAAGACCTCCACAGGAAGTATCCAGAGATAAAAATAATATTCTCTACAATAACTCAGAGAAACCTGTGGAGATCTGCACAACCTCAAAAAATTGAGAAAGCACGGCGCTTCATTAACAGTGTGATGGCTTCCTTCATCTCATGTATTGATGGAGCCATTGTTCATCATCGTCAGATAAAGCGTAGACATCCTGGACATTTTTTGCCTGATCTAGTTCATCTGACCCCTTTGGgaaatgatatttttttaaacaatattgccCAGTGTTTGAAAGACCAAAAATCAGGTAGGGTTTGAAGTGAACTGCTGGATTTGAACTTTCTAACCAAAGTTGTGACATAAAAAATTTCCAGAAATTTTAAACTTTGTGACGTTTGAtgaacaacatattttatttatttttaaaaaaatttcaaggGAAGCCATCACACTGACATCTGTCACAGCTGTTCCTTTTCAATACTTTTCTTTGTTCTTCCAATTTCCCCATGGTGAATGTAGCTaagattttgtaaataaatgttcatttttacttGCA

Function

GO:

id name namespace
GO:0008608 attachment of spindle microtubules to kinetochore biological_process
GO:0061061 muscle structure development biological_process
GO:0005901 caveola cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008781 True 802 lncRNA 0.40 1 14873329 14874130

Neighbor

gene id symbol gene type direction distance location
XLOC_004041 CU019562.1 coding downstream 44005 14827374 ~ 14829324 (-)
XLOC_004040 sgta coding downstream 60266 14771908 ~ 14813063 (-)
XLOC_004039 NA coding downstream 114241 14754905 ~ 14759088 (-)
XLOC_004038 CR550307.1 coding downstream 177465 14693481 ~ 14695864 (-)
XLOC_004037 adora1a coding downstream 204303 14667066 ~ 14669026 (-)
XLOC_004043 si:dkey-6d5.1 coding upstream 41650 14915780 ~ 14924138 (-)
XLOC_004044 elavl1b coding upstream 81354 14955484 ~ 15001712 (-)
XLOC_004045 CR550302.1 coding upstream 144008 15018138 ~ 15019527 (-)
XLOC_004046 slc1a8a coding upstream 194177 15068307 ~ 15090564 (-)
XLOC_004047 rpn2 coding upstream 351404 15225534 ~ 15297210 (-)
XLOC_004019 CR450764.8 misc downstream 2181638 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 2251562 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 2282033 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 2360067 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 2373067 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 1253252 16127382 ~ 16127678 (-)
XLOC_004036 NA non-coding downstream 441129 14430922 ~ 14432200 (-)
XLOC_004035 NA non-coding downstream 562092 14308897 ~ 14311237 (-)
XLOC_004048 NA non-coding upstream 437251 15311381 ~ 15313599 (-)
XLOC_004050 NA non-coding upstream 882596 15756726 ~ 15761871 (-)
XLOC_004051 FP016142.5 non-coding upstream 901322 15775452 ~ 15780923 (-)
XLOC_004052 FP016142.4 non-coding upstream 921963 15796093 ~ 15797568 (-)

Expression


Co-expression Network