XLOC_004041 (CU019562.1)


Basic Information

Item Value
gene id XLOC_004041
gene name CU019562.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14827374 ~ 14829324 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007702
attttatgttattctcgttcattgggattcctataacatcctgaatcttgtaccggctgggtatacaatttcttaagcacaagcatgtcagtcttggtcactaaacagtggcgattgaccgctatcctaaaaaggcagaaccctacttactcagattaggatattttttatgcggtccccatagatctgctacctcctaaatcaaacatagctatttagtcatataatgatcattactatagaattaagcagaccagtcgtacttaaactattagtaactttgaataatcactatactatctaaatagtattataagtttaACAGGTGAAGGACTttccccttagatatccttttacagttTAAGAATACATGAATTAATCCCAatgtgttagtcggagctctaaagacatcgtatagcgtgccgcaatgctccgtctaccgtgttctagtccgctactaacctgtaCAGGTGCTTGTGGTgttatgaaattaccacaatctactagagataataacactaactctgtttgaataattcaaaacataacaatttattagtcaggtaaatgtgtattacgccaattcattcagtcaattcataaacgatcagtACAAGACATCAAGTTATCAAAGACAAGTCCAAGATTAAatgatgcattcctgacttcaaaATACACATAACATGGAGCGTATGCTCCATGttacgggctgatctgggtaagcaGAATCGCGTCGAAcatttctcaaaccttaccttaaagataatccaagaatcccctcaaggaaaggggtgtgtgcataacaaaagtcacacccttcacagtggttcaaaagatgcctgaagttttatatttattgttttcattatgtctatttctgagagaatgagaccattgtacc

Function

GO:

id name namespace
GO:0015801 aromatic amino acid transport biological_process
GO:0089709 L-histidine transmembrane transport biological_process
GO:0032329 serine transport biological_process
GO:0005615 extracellular space cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100601

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007702 True 901 lncRNA 0.37 3 14827374 14829324

Neighbor

gene id symbol gene type direction distance location
XLOC_004040 sgta coding downstream 14311 14771908 ~ 14813063 (-)
XLOC_004039 NA coding downstream 68286 14754905 ~ 14759088 (-)
XLOC_004038 CR550307.1 coding downstream 131510 14693481 ~ 14695864 (-)
XLOC_004037 adora1a coding downstream 158348 14667066 ~ 14669026 (-)
XLOC_004036 NA coding downstream 395174 14430922 ~ 14432200 (-)
XLOC_004042 NA coding upstream 44005 14873329 ~ 14874130 (-)
XLOC_004043 si:dkey-6d5.1 coding upstream 86456 14915780 ~ 14924138 (-)
XLOC_004044 elavl1b coding upstream 126160 14955484 ~ 15001712 (-)
XLOC_004045 CR550302.1 coding upstream 188814 15018138 ~ 15019527 (-)
XLOC_004046 slc1a8a coding upstream 238983 15068307 ~ 15090564 (-)
XLOC_004019 CR450764.8 misc downstream 2135683 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 2205607 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 2236078 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 2314112 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 2327112 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 1298058 16127382 ~ 16127678 (-)
XLOC_004035 NA non-coding downstream 516137 14308897 ~ 14311237 (-)
XLOC_004034 NA non-coding downstream 678948 14147663 ~ 14148426 (-)
XLOC_004048 NA non-coding upstream 482057 15311381 ~ 15313599 (-)
XLOC_004050 NA non-coding upstream 927402 15756726 ~ 15761871 (-)
XLOC_004051 FP016142.5 non-coding upstream 946128 15775452 ~ 15780923 (-)

Expression


Co-expression Network