RNA id: TCONS_00007701


Basic Information

Item Value
RNA id TCONS_00007701
length 618
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_004040
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14771908 ~ 14813063 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGTGACTCTAGGAAACTGTCGCATGCGCAATACGCAAATAGAAGCTTCAGTGTCATACGTAACATCATTAGACTGGTTCTCTTCACACATTTCGTTTTGTGAGGTGTACACCTCAGTACAATGGCAGACACAAAGCATATTGCATTCTCCATCATCCAGTTTCTCCGTGACCAGCTGTCCTCTGGGGGTCTGTCATCAGATGCACAAGAAAGTTTAGAAGTTGCTATTCAGTGCTTGGAGACAACATTTGGGATTTCTGTAGATGACCAGAACTTAGCAGTCAGTCAGTCTCTGCCAGAGTTATTTGCTTTTGCAACTAAACAGACTGGTACAACACAAGAAAACACATTTGTAACCACTGGATCACCTTATGAGCATCAGTTAGCAGAGGCTGAGCGTCTTAAAACAGATGGAAATGATCAGATGAAAGTGGAAAACTTTAGTGCAGCTGTGGAGTTTTACTCTAAAGCCATCCAGCTTAATCCTCAAAATGCTGTCTACTTTTGCAACagagCTGCAGCATACAGCAAGCTAGGGAACTATGCTGGAGCTGTTCAAGACTGTGAACGTGCCATTGGAATTGATGCAAACTACAGTAAAGCATATGGACGAAtggg

Function

GO:

id name namespace
GO:1903646 positive regulation of chaperone-mediated protein folding biological_process
GO:0006620 posttranslational protein targeting to endoplasmic reticulum membrane biological_process
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0072380 TRC complex cellular_component
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0060090 molecular adaptor activity molecular_function

KEGG:

id description
ko00550 Peptidoglycan biosynthesis
ko01003 Glycosyltransferases
ko01011 Peptidoglycan biosynthesis and degradation proteins
ko03110 Chaperones and folding catalysts
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030131-8811 Predicted to enable molecular adaptor activity. Predicted to be involved in positive regulation of chaperone-mediated protein folding; posttranslational protein targeting to endoplasmic reticulum membrane; and ubiquitin-dependent ERAD pathway. Predicted to be part of TRC complex. Predicted to be active in membrane. Orthologous to human SGTA (small glutamine rich tetratricopeptide repeat co-chaperone alpha).

Ensembl:

ensembl_id ENSDART00000122645

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008780 lncRNA downstream 29934 14754905 ~ 14759088 (-) True XLOC_004039
TCONS_00008779 lncRNA downstream 29942 14754905 ~ 14759080 (-) False XLOC_004039
TCONS_00007698 lncRNA downstream 93158 14693481 ~ 14695864 (-) True XLOC_004038
TCONS_00008778 lncRNA downstream 356822 14430922 ~ 14432200 (-) True XLOC_004036
TCONS_00007696 lncRNA downstream 477785 14308897 ~ 14311237 (-) True XLOC_004035
TCONS_00007702 lncRNA upstream 14311 14827374 ~ 14829324 (-) True XLOC_004041
TCONS_00008781 lncRNA upstream 60266 14873329 ~ 14874130 (-) True XLOC_004042
TCONS_00007715 lncRNA upstream 205075 15018138 ~ 15019527 (-) True XLOC_004045
TCONS_00007722 lncRNA upstream 456744 15269807 ~ 15281902 (-) False XLOC_004047
TCONS_00008460 lncRNA upstream 498318 15311381 ~ 15313599 (-) True XLOC_004048
TCONS_00007697 mRNA downstream 119996 14667066 ~ 14669026 (-) True XLOC_004037
TCONS_00007694 mRNA downstream 686864 14071689 ~ 14102158 (-) False XLOC_004033
TCONS_00007695 mRNA downstream 686891 14072782 ~ 14102131 (-) True XLOC_004033
TCONS_00007691 mRNA downstream 1170610 13616015 ~ 13618412 (-) True XLOC_004031
TCONS_00007690 mRNA downstream 1177890 13605623 ~ 13611132 (-) True XLOC_004030
TCONS_00007703 mRNA upstream 102717 14915780 ~ 14924138 (-) True XLOC_004043
TCONS_00007706 mRNA upstream 142421 14955484 ~ 15001702 (-) False XLOC_004044
TCONS_00007708 mRNA upstream 142421 14955484 ~ 15001702 (-) False XLOC_004044
TCONS_00007710 mRNA upstream 142421 14955484 ~ 15001702 (-) False XLOC_004044
TCONS_00007709 mRNA upstream 142421 14955484 ~ 15001702 (-) False XLOC_004044
TCONS_00007689 other downstream 1306235 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007673 other downstream 2032747 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007664 other downstream 2097331 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 2167255 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 2197726 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007741 other upstream 1204820 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 1207866 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 1245128 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007751 other upstream 1314319 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007758 other upstream 1519761 16332824 ~ 16336886 (-) False XLOC_004066

Expression Profile

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