RNA id: TCONS_00008460


Basic Information

Item Value
RNA id TCONS_00008460
length 1438
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_004048
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 15311381 ~ 15313599 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTTGTggagaactgttgtatataaatATTAACTTGTTAAACGTGACTGTTTCATAATACAAcagtaatactaaaataaagtGGTATGGTAGAGCCTCTTCTAACCTTCTATCTGTTTAAACAAATACAGGTGGCAATGGATAGTGACAACAAGAAAATGATGGAGACAAGGAATTGGAGAACAGCCTTTTGCAAAGGAAGTCTCCACAGAAAAACTTCTGTAGAGCTTGATGACGACATAGTCAAAGCTTTGAAAGATGGTGCTTGCCCATTTGGACATTACAGTGTCAAAGAGGATGTATGATGTATAAGAGTGAATAAATCAAGAGTTTCACTTTTCACCCAAGAATTggccacattttattttttttggtaaagaaactcttagggtgctttcacatctgtagttcgcttcatttggtccggaccaagggtaataaatgatacattgttgcattctctgctgtctttgggtcgttttcacaccacactgctggctttggtcagttaaaacgaaccaaaatgcagtcatctgacaaaatccacatctctcattggccagatgttgttgaacatatttcctaaactgcttattgattggtcagaattcacatgtgggaaaatgccagtgaactgccgcaggtaaacaaaaccttttactctggagggacgactgcgctggctaaTTGTATcactgctttagacaaactatacattacgaaaatgaagcgcggccgcggctggaaaacagtgtttaatgcatcgctcgtcacttcaggaggaggcgtgaattaatttagctaaactgcgacatggtcgtCGTGcgtaaatattaccaacgatccatcaggtaatgttttcccccctctctctctctctgttggtaaagcgctgtcaacaaatatttttcctccatatcccataatgcacagcgcatcggcctacggcagctgaatggGGTATATccagaagcatgctaataggacttttaatttgccagtaatctgggttaagcgcttccggcgaattgaatgccaatgcaaaatccagtgcgtttaaggtctgttttctttaaaaatcagcgatctccactagctaaGTGATATccaatttaaagtgggtctcagattgtacaagaagcagtgcattaaattgcatttcccccgccatatctttataatatgagcatttattttaccccagtatattcaatggagcttctgcgttagcctgccgattctgacgggcgcgtgcgagtaaacagctttttgtctcgttttacgctcgagcaaccaaataaatgctaaagtttatttaactgaatgtattttaatgacattacaacattgatgctgtataaggaaccgtataaaatggaaaaagttcacaataacaggtcaccagaagtgtatcagcatgggaacagcactagctcgg

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0007049 cell cycle biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0072686 mitotic spindle cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005813 centrosome cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0004519 endonuclease activity molecular_function
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007722 lncRNA downstream 29479 15269807 ~ 15281902 (-) False XLOC_004047
TCONS_00007715 lncRNA downstream 291854 15018138 ~ 15019527 (-) True XLOC_004045
TCONS_00008781 lncRNA downstream 437251 14873329 ~ 14874130 (-) True XLOC_004042
TCONS_00007702 lncRNA downstream 482057 14827374 ~ 14829324 (-) True XLOC_004041
TCONS_00008780 lncRNA downstream 552293 14754905 ~ 14759088 (-) True XLOC_004039
TCONS_00008782 lncRNA upstream 443127 15756726 ~ 15761871 (-) True XLOC_004050
TCONS_00007728 lncRNA upstream 461853 15775452 ~ 15780923 (-) True XLOC_004051
TCONS_00007730 lncRNA upstream 482494 15796093 ~ 15797568 (-) False XLOC_004052
TCONS_00007729 lncRNA upstream 482494 15796093 ~ 15797568 (-) True XLOC_004052
TCONS_00007731 lncRNA upstream 484659 15798258 ~ 15799923 (-) True XLOC_004053
TCONS_00007720 mRNA downstream 14171 15225608 ~ 15297210 (-) False XLOC_004047
TCONS_00007719 mRNA downstream 14171 15225608 ~ 15297210 (-) False XLOC_004047
TCONS_00007721 mRNA downstream 14175 15234626 ~ 15297206 (-) False XLOC_004047
TCONS_00007723 mRNA downstream 14198 15270295 ~ 15297183 (-) False XLOC_004047
TCONS_00007724 mRNA downstream 14215 15280867 ~ 15297166 (-) False XLOC_004047
TCONS_00007727 mRNA upstream 32055 15345654 ~ 15435495 (-) True XLOC_004049
TCONS_00007735 mRNA upstream 519966 15833565 ~ 15850794 (-) False XLOC_004056
TCONS_00007736 mRNA upstream 519966 15833565 ~ 15875022 (-) False XLOC_004056
TCONS_00007737 mRNA upstream 519966 15833565 ~ 15875054 (-) False XLOC_004056
TCONS_00007738 mRNA upstream 520798 15834397 ~ 15874974 (-) True XLOC_004056
TCONS_00007689 other downstream 1828594 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007673 other downstream 2555106 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007664 other downstream 2619690 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 2689614 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 2720085 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007741 other upstream 704284 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 707330 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 744592 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007751 other upstream 813783 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007758 other upstream 1019225 16332824 ~ 16336886 (-) False XLOC_004066

Expression Profile

//