RNA id: TCONS_00007731


Basic Information

Item Value
RNA id TCONS_00007731
length 454
lncRNA type antisense
GC content 0.48
exon number 2
gene id XLOC_004053
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 15798258 ~ 15799923 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCCATCTcgcgatattgtatcacttcaggtacgcgcctactgatttgttgattcaaacgagttgtgaatcaagaagcctctaaagatccgaatcaaactgcagcagcacgccacgaggttttgctcagactaatcgtaacaatagccttatttactgacaacgatttactcacatagcagcaagacccatgggatttcatcagccactcaccatcagagtcctcagtggaagctgagaagagcagaagaggaagccaagcaagagatgccagaaaaaaagggggaaggaaataatgtgttattttgctgtttgagtataggcaggcgcagtgggtagcacaatcgcctcacagcaagaaggtcgctggttcgagcctcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttagcgtgggtttcctccgggtgct

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000172275

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007730 lncRNA downstream 690 15796093 ~ 15797568 (-) False XLOC_004052
TCONS_00007729 lncRNA downstream 690 15796093 ~ 15797568 (-) True XLOC_004052
TCONS_00007728 lncRNA downstream 17335 15775452 ~ 15780923 (-) True XLOC_004051
TCONS_00008782 lncRNA downstream 36387 15756726 ~ 15761871 (-) True XLOC_004050
TCONS_00008460 lncRNA downstream 484659 15311381 ~ 15313599 (-) True XLOC_004048
TCONS_00007732 lncRNA upstream 2527 15802450 ~ 15803637 (-) True XLOC_004054
TCONS_00007733 lncRNA upstream 6469 15806392 ~ 15807508 (-) False XLOC_004055
TCONS_00007734 lncRNA upstream 6720 15806643 ~ 15809019 (-) True XLOC_004055
TCONS_00007739 lncRNA upstream 45665 15845588 ~ 15846513 (-) True XLOC_004057
TCONS_00007750 lncRNA upstream 304085 16104008 ~ 16115790 (-) True XLOC_004061
TCONS_00007727 mRNA downstream 362763 15345654 ~ 15435495 (-) True XLOC_004049
TCONS_00007723 mRNA downstream 501075 15270295 ~ 15297183 (-) False XLOC_004047
TCONS_00007735 mRNA upstream 33642 15833565 ~ 15850794 (-) False XLOC_004056
TCONS_00007736 mRNA upstream 33642 15833565 ~ 15875022 (-) False XLOC_004056
TCONS_00007737 mRNA upstream 33642 15833565 ~ 15875054 (-) False XLOC_004056
TCONS_00007738 mRNA upstream 34474 15834397 ~ 15874974 (-) True XLOC_004056
TCONS_00007740 mRNA upstream 214604 16014527 ~ 16021424 (-) False XLOC_004058
TCONS_00007689 other downstream 2315471 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007673 other downstream 3041983 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007664 other downstream 3106567 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 3176491 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 3206962 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007741 other upstream 217960 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 221006 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 258268 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007751 other upstream 327459 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007758 other upstream 532901 16332824 ~ 16336886 (-) False XLOC_004066

Expression Profile

//