XLOC_004055 (FP016142.1)


Basic Information

Item Value
gene id XLOC_004055
gene name FP016142.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 15806392 ~ 15809019 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007733
cactgttgtatttacagaagttgtatgagaataagctacaggttgatttatactaatctgttatttttcttttttagcacgactgactgaagttttaaaatcatgcaacgtcataaagcagcagctgggcctgattctcacaaaaccaaaacagacgtgatgaaattccagatgtgaacacatttgaccttcctttggccaatttgatttggaaaagcttgaaaatcaactaaaggagcagcccgaacaaatgaagaaactgatggagtgaggacaaatgttcataccacgccactgataaagaagtggaaaaatgcattacaaggtagctacaactcgccctgacagggatggaggaagaaagaagagaaagctaatgtgtcaaatgtctacatcactattttgttttattttttttaaacaacattttaagtgtattaggatgttccctgatacttgaacaatttgtttctttcatttgcatttatatatatatatatgtatatgtatatatatatgtgtgtgtgtgtgtgtgtatatatatgtatggtatgtatgtgtgtgcgccaaattctgaagaaagaaacatcttgatacatttttaataaacgtaatacaaataaaattataaatataaaattgcacaagacgtgtgtatatatgaaatgtatatgtttgtgcaattgattttgttcaagtttatttaaaaaaaaaagtttgactttatacttctgcaattatatatatatatatatatatatatatatatatatatatatatatatatatatttgtttgtttattattattttaatgttttattaaaaatgtttcaagatgtttcttcagaattctgcagtactttttacaagtttgacttggatattttacggattgtcattggtatttttaagatgtttcttgctatatcttaaattggtttatatatttaggtt
>TCONS_00007734
atagatgcatatgaggaagctcgactcaaacatccatacgcaactgtgatttctgactggtagacagatgaggatgatgatcgcctgtcatacatctaaagacagaacaggacagtatagacacatctataccatgatgaagaaaaattacttggaacaaagaggctggataaaaggcagcacgactgactgaagttttaaaatcatgcaacgtcataaagcagcagctgggcctgattctcacaaaaccaaaacagacgtgatgaaattccagatgtgaacacatttgaccttcctttggccaatttgatttggaaaagcttgaaaatcaactaaaggagcagcccgaacaaatgaagaaactgatggagtgaggacaaatgttcataccacgccactgataaagaagtggaaaaatgcattacaaggtagctacaactcgccctgacagggatggaggaagaaagaagagaaagctaatgtgtcaaatgtctacatcactattttgttttattttttttaaacaacattttaagtgtattaggatgttccctgatacttgaacaatttgtttctttcatttgcatttatatatatatatatgtatatgtatatatatatgtgtgtgtgtgtgtgtgtatatatatgtatggtatgtatgtgtgtgcgccaaattctgaagaaagaaacatcttgatacatttttaataaacgtaatacaaataaaattataaatataaaattgcacaagacgtgtgtatatatgaaatgtatatgtttgtgcaattgattttgttcaagtttattt

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095672

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007733 False 956 lncRNA 0.28 2 15806392 15807508
TCONS_00007734 True 808 lncRNA 0.34 4 15806643 15809019

Neighbor

gene id symbol gene type direction distance location
XLOC_004054 FP016142.7 coding downstream 2755 15802450 ~ 15803637 (-)
XLOC_004053 FP016142.3 coding downstream 6469 15798258 ~ 15799923 (-)
XLOC_004052 FP016142.4 coding downstream 8824 15796093 ~ 15797568 (-)
XLOC_004051 FP016142.5 coding downstream 25469 15775452 ~ 15780923 (-)
XLOC_004050 NA coding downstream 44521 15756726 ~ 15761871 (-)
XLOC_004056 rap1ab coding upstream 24546 15833565 ~ 15875054 (-)
XLOC_004057 FP003590.1 coding upstream 36569 15845588 ~ 15846513 (-)
XLOC_004058 zgc:173544 coding upstream 205508 16014527 ~ 16021522 (-)
XLOC_004059 CR848761.1 coding upstream 249172 16058191 ~ 16058307 (-)
XLOC_004060 SPATA1 coding upstream 275562 16084581 ~ 16093022 (-)
XLOC_004019 CR450764.8 misc downstream 3114701 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 3184625 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 3215096 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 3293130 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 3306130 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 318363 16127382 ~ 16127678 (-)
XLOC_004062 NA non-coding upstream 310993 16120012 ~ 16120290 (-)
XLOC_004067 AL844563.2 non-coding upstream 835378 16644397 ~ 16644513 (-)
XLOC_004068 AL844563.1 non-coding upstream 860199 16669218 ~ 16675164 (-)

Expression


Co-expression Network