XLOC_004062


Basic Information

Item Value
gene id XLOC_004062
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 16120012 ~ 16120290 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008461
GCCGGGTTCAGTGGCGTTAACCTGTAATCCAAGCTACTGGGAGGCTGAGTCTGCGGatcgcttgagctcagggcttctggGCTGCAGTGGACTATGTCGATTGGGTGTCCACACTAAGTTCGGTATCGATATGGTGCTCCCGGGGGAGCTTGGgaccagggccggattaaccaatgggccttatgggcgcaggcccaggggcccgtgcgcactaggggcccctgcgaggggggagaaaaaaagacaatttcggaatgtctttttaggctaattgcaaat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008461 True 279 lncRNA 0.57 1 16120012 16120290

Neighbor

gene id symbol gene type direction distance location
XLOC_004061 rpf1 coding downstream 4208 16094661 ~ 16115804 (-)
XLOC_004060 SPATA1 coding downstream 26990 16084581 ~ 16093022 (-)
XLOC_004059 CR848761.1 coding downstream 61705 16058191 ~ 16058307 (-)
XLOC_004058 zgc:173544 coding downstream 98490 16014527 ~ 16021522 (-)
XLOC_004056 rap1ab coding downstream 244958 15833565 ~ 15875054 (-)
XLOC_004064 arpc4l coding upstream 19607 16139897 ~ 16152400 (-)
XLOC_004065 rab7a coding upstream 56313 16176603 ~ 16215470 (-)
XLOC_004066 lrig1 coding upstream 209486 16329776 ~ 16395956 (-)
XLOC_004067 AL844563.2 coding upstream 524107 16644397 ~ 16644513 (-)
XLOC_004068 AL844563.1 coding upstream 548928 16669218 ~ 16675164 (-)
XLOC_004019 CR450764.8 misc downstream 3428321 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 3498245 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 3528716 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 3606750 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 3619750 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 7092 16127382 ~ 16127678 (-)
XLOC_004057 FP003590.1 non-coding downstream 273499 15845588 ~ 15846513 (-)
XLOC_004055 FP016142.1 non-coding downstream 310993 15806392 ~ 15809019 (-)
XLOC_004054 FP016142.7 non-coding downstream 316375 15802450 ~ 15803637 (-)
XLOC_004053 FP016142.3 non-coding downstream 320089 15798258 ~ 15799923 (-)
XLOC_004070 NA non-coding upstream 961132 17081422 ~ 17091195 (-)
XLOC_004071 CR769769.2 non-coding upstream 973463 17093753 ~ 17097933 (-)
XLOC_004072 CR769769.3 non-coding upstream 1024019 17144309 ~ 17147461 (-)

Expression


Co-expression Network