XLOC_004064 (arpc4l)


Basic Information

Item Value
gene id XLOC_004064
gene name arpc4l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 16139897 ~ 16152400 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007752
ATAAATTACGGGAGTGTGAGGACGCAATGGAGGCGTGATTCCTCATCTCCAGGCGTGGCGTGCGGACTTCCGTCTTCCTCCACAGACCTCATATAAAATGacGGCAACATTGCGACCCTACCTGAATGCTGTGCGCGCCACTCTTCAAGCAGCCCTGTGTCTGGAGAACTTCTCCTCTCAGGTGGTTGAGCGACACAACAAGCCTGAGGTTGAGGTTAGAAGCAGCAAAGAGCTCCTGTTGCAGCCAGTGGTCATAAGCCGAAATGACAAGGAGAAGGTCCTGATCGAGGGCTCTATAAACTCAGTCAGAGTTAGCATTGCTGTCAAGCAGgctGACGAGATCGAGAAGATCCTGTGCCATAAATTTATGAGATTTATGATGATGCGAGCGGAGAACTTCTTCATCTTGAGGAGGAAACCTGTCGAGGGGTATGACATCAGCTTCCTCATTACTAACTTCCACACAGAGCAGATGTATAAACACAAGCTGGTGGACTTTGTTATCCATTTCATGGAGGAGATCGATAAGGAGATCAGTGAGATGAAGCTGTCGGTCAACGCTCGCGCCCGAATTGTTGCAGAGGAATTCCTCAAGAATTTCTGAGGACCCTTGTCTACATTCCTAATACCCATCAGAGATTGGTGTTGCTTCGGTTCTTGTGGACAAAAACATTCAAAGTTTTTTAAAGTCTCCACAGAGCAAAGGGGAAAGAGTTTATTATTTAGCAATCAAGCAAGAAGATCTACAGGAACAAGCGGCCAGTCCTGCAGCACTATACACAGTCCCCTTTGCCTCCTGTTCAAGGTGCTCCTTGTGCCCATGGATATTATACATTTAGTCAAGAATTTATTACTCTCATTTTCTGTTGttagggggaaaaaagaaaacacagtCAAGGCAGGTCCTTAATAGTATTACCTGTAATTAATATTGATGGGCACAGGAATCTTGTTATTGGACTGTATTTGTTTTCTGTTGTCTTTTATATACATGTACTCATGTGCTTAATTTTGTTATAACAGGGAAAAAATAATCAAGTCAATGTAAAAGAGAtcatgagagaaaaagaagaaaatgtgtttatattttggCACTGCTCACTCCAATATGATGATAACTAtagaaaaaaaagctgcataaaacatattaacaataaattcaataaaaatatattgtgctTTCGGTACCTCTTGAGATTTATTTCCATATTCcatgctctttttattttttattttgctcatttGATTTTTTCTGTGATTGTGCTTTCCATCCTGTGATATGAATTAATCCTaagtctttatttttataaatatttaaatctgaTACAGGCCATCTGAAACATGTATTGAGCCAACTTATCACATTGCCAGGTCAATTGTGTAACTCATGCAGTCTGCGCATAAAAGTTGATGAGAATCGTAAAGCTAGACGGACTGTAGAAGGGCATATCGATGCTCAAATGCTTAGTAATCAATAGAGCAATCATTTTGTGATTCGTCATTATGACTTGAATAGATGTTTAACAATGGATATCAATATAGGCCAGTCAATTTCCGGTAATCTGACTGTGATAATGGTTTGTTATCATGTTAATTGCACAAGAGAGAACGTAATAACAGCACAATCATTCATAATGTGAGATGTAAAATATTTAGAGTTGTTTTAAATTTGCAGGATACATGTAAATGCCATTCTGCATGGCTAAACAAAGCAGTCTGACCTTGCTAAAGTGTGTattgggtgtactcatttatgctgagcactgtatgtgagTTCTATAAAGGTGTCCAGGTTTAGACTGGTGCTGTAAAATCAGTCTGATGCTACTGCTgttgttaatctaatgtaaaaaaaaaaaaaacccaggggttgcaatccaatggaaaaatgtgaagtttcacaaactaatttcaaactaattttaatcattttaaaattgtgtacAAGACTTGATCTGGACCATAAATACACACTAGAGAGATCTGCTTCTTCACTGGCCCTTTTTAAAACTGTTCTCTTAAATTTGTTAAAGTAAATATCCATTTTAaagttaatataaattaattccATAAAGTTACTTTACAAAAAGTAActttattaaaacacttttattaagATGTATTTTTCTTACATCTTCTCCCTTTATTATATTTTCTCATGTGCACAGTAGAAAACAATATTCCCTGTCCAATCGAGTTCTTTGCTTTCAACAGTAAAatgttatacataaatatatgaaaaaaataaataaataaaataaatatatatatatatacacacacatatacacacacacactaccggtcaaaagtttggggtcagtaaaatgtttaaatgtttttaaataagcttCCCCTGCTCACTGAGTCTGTTtctcattaaaaatacagtacaaattgtaaaactgtTAAATGCTATTCTATATTCTTACCGCTCGAAAAAaataactacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgcagtgacgcagtaggtagtgctgtcgcctcacagcaagaaggtcgctggtttgagcctcagctgggtcagttggcatttctatatggagtttgcatgttctcactgcgtttGCGTTCCTCCGGGtacaccggtttcccccacagtccaaacacatgcggtaaaGGTAAATTAGCTAGGGtaaattctccgtagtgtatgtatatgtgcaaatgagtgtgtatgggtttcccaatgatgggttgcagctggaagtgcatccactgcataaaacatatgctggatgagttggcggttaattctgcgatgatgaccccagattaaaaaagggactaatccaaaaagaaaatgaatgaatatatctgacccacgcacgcacacacacacaatagtgcAAAATgtacaactaaataaatatatataatatactatatatattatttctgataTGTACagtcaattcatctttatttacaaAACTTATACAATGCAGAtgttgtcaaagcagcttaacaaatgtctgttgaagttcagttcagtgtaatgtcTCTGCTGAATGCCGATCCCATGAAGAGTAGCTCAAAAGAGGCAGTTTCCTGGGGAAACGCTGATCCTGTAGTGTTTATGAGCACAGATGGTGGTTCTGGTAGTTCTCATCTATGAAGGCTTCTTTATAGATGAGTTTTGATGATTCTTGACAATTGTTTTGTTGAAGATTTTGCTGCTTTGTGTGTGAAGTTCCttaatgaggaaaaataaaagaagaaaaatttaAAAGCATGTCTGAAATATGTCTAGTGCATACTTAGATCAAATAGGAAGCAACACAAAAGAAAATCATTGTCTGTTAACTGCCTCCTAAAGCTACAATCAGCCCATAAAACAGATACTGCAACAAGAATATTATTTATCACAAAGTTGTTTTGAAGTAGTTATATGCAGTAAACAGACGCCCTAGTTTTCAATTATTTTTGTGATCCGTAAATTaaacgcaaaatcaacaaaaagtttaGATCTTTTGCGATTCTGCAAAATTCTGCGATTAGACATCCTGCGGTACAAATTGACCAAATGACATGGCGCAAATTTGTAGACTTCAGACTATAACAGCGTCTAACAAATGAAGCagtggaacagacagaaaaggaagcagcttacaatgatggagattggttcaaggatgacGGCCGCTGGACGTGACTCAATTGAATGagattatttttgctttatatgTATGGCTGCTATTATGATATGCGCCAAATTGATAAATGATTTTCCCTGCCATTGAAGAGAGAAAACGCTTCACTGCCATTGACATGTTGTAGGTTTAATATGGTAAGGGAAGCTCTAATGCATGTTctgagtgaggtacatgatgtcatGCCTCAGAGAGCAAAATCTGAGAAACAGAAAGTAAGATTGTCGGTAAAAAATAAGAGTTATGCAACCTTATTTTGGCTTAACCCCTACCGTTtcagatcttgtcttgacaaaagCTTTATTTTAAAGACTTGAGTCATGAAGATATATATTAATCGCAAAATTTTCAGGAACTACCACCAGAAAATTTGGTCgcaaaaatagagaaaataaattgtaaaaaaccAGGGGTTCATGAGTAAAGTTTTAGTAAAACAtcttcatatgtgtgtgtatatactgtacagattttcagaaaatgtaaaaaaaaaaaaattttgttttgttttgtttttataaacatcTTCGAATATTCAAATGTGTTTCTTTCACATTAACTGTATTGCTAAAATGTTTAATACTTGTACatttttatgagttttaagtgcacttaaatatgttagccattagcaaaacTGAAGATGATTAATAAAAGTGCCAAAACTAACATGACATCATCAGCTTTGTGTGTGCCAGTATTAGAAATGTTGTTTCCTACTGGATCAGTTGTATTTACCTTCATCCCTTCTTCATCTCCTGATTCTTCATCCACTTGTGCTGTAAGATGTCCACCAGTCTTGACAATTTGTTATCCAGGCACTTTTCTATCAGATCACAGCAGTCTGTACAAGGAGAAAGAGATAGTTAATCAAGACTGTGTTAGACATTAAA
>TCONS_00007753
TATTTATAGATTACACCCTGTTTGATAAACGTACAATTTATTTGACCTGTCGTGTAATTTGCCATATAAGGAAGAAAAAACGAATCTAGGAAAAACTGCTGCTGGGCTTTACCATAAATTACGGGAGTGTGAGGACGCAATGGAGGCGTGATTCCTCATCTCCAGGCGTGGCGTGCGGACTTCCGTCTTCCTCCACAGACCTCATATAAAATGacGGCAACATTGCGACCCTACCTGAATGCTGTGCGCGCCACTCTTCAAGCAGCCCTGTGTCTGGAGAACTTCTCCTCTCAGGTGGTTGAGCGACACAACAAGCCTGAGGTTGAGGTTAGAAGCAGCAAAGAGCTCCTGTTGCAGCCAGTGGTCATAAGCCGAAATGACAAGGAGAAGGTCCTGATCGAGGGCTCTATAAACTCAGTCAGAGTTAGCATTGCTGTCAAGCAGgctGACGAGATCGAGAAGATCCTGTGCCATAAATTTATGAGATTTATGATGATGCGAGCGGAGAACTTCTTCATCTTGAGGAGGAAACCTGTCGAGGGGTATGACATCAGCTTCCTCATTACTAACTTCCACACAGAGCAGATGTATAAACACAAGCTGGTGGACTTTGTTATCCATTTCATGGAGGAGATCGATAAGGAGATCAGTGAGATGAAGCTGTCGGTCAACGCTCGCGCCCGAATTGTTGCAGAGGAATTCCTCAAGAATTTCTGAGGACCCTTGTCTACATTCCTAATACCCATCAGAGATTGGTGTTGCTTCGGTTCTTGTGGACAAAAACATTCAAAGTTTTTTAAAGTCTCCACAGAGCAAAGGGGAAAGAGTTTATTATTTAGCAATCAAGCAAGAAGATCTACAGGAACAAGCGGCCAGTCCTGCAGCACTATACACAGTCCCCTTTGCCTCCTGTTCAAGGTGCTCCTTGTGCCCATGGATATTATACATTTAGTCAAGAATTTATTACTCTCATTTTCTGTTGttagggggaaaaaagaaaacacagtCAAGGCAGGTCCTTAATAGTATTACCTGTAATTAATATTGATGGGCACAGGAATCTTGTTATTGGACTGTATTTGTTTTCTGTTGTCTTTTATATACATGTACTCATGTGCTTAATTTTGTTATAACAGGGAAAAAATAATCAAGTCAATGTAAAAGAGAtcatgagagaaaaagaagaaaatgtgtttatattttggCACTGCTCACTCCAATATGATGATAACTAtagaaaaaaaagctgcataaaacatattaacaataaattcaataaaaatatattgtgctT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-18 No description available

Ensembl:

ensembl_id ENSDARG00000058225

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007752 False 4609 mRNA 0.36 6 16139897 16152105
TCONS_00007753 True 1294 mRNA 0.41 7 16143325 16152400

Neighbor

gene id symbol gene type direction distance location
XLOC_004062 NA coding downstream 19607 16120012 ~ 16120290 (-)
XLOC_004061 rpf1 coding downstream 24093 16094661 ~ 16115804 (-)
XLOC_004060 SPATA1 coding downstream 46875 16084581 ~ 16093022 (-)
XLOC_004059 CR848761.1 coding downstream 81590 16058191 ~ 16058307 (-)
XLOC_004058 zgc:173544 coding downstream 118375 16014527 ~ 16021522 (-)
XLOC_004065 rab7a coding upstream 24203 16176603 ~ 16215470 (-)
XLOC_004066 lrig1 coding upstream 177376 16329776 ~ 16395956 (-)
XLOC_004067 AL844563.2 coding upstream 491997 16644397 ~ 16644513 (-)
XLOC_004068 AL844563.1 coding upstream 516818 16669218 ~ 16675164 (-)
XLOC_004069 suclg2 coding upstream 585779 16738179 ~ 16975190 (-)
XLOC_004063 CR854846.1 misc downstream 12219 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 3448206 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 3518130 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 3548601 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 3626635 12512966 ~ 12513262 (-)
XLOC_004057 FP003590.1 non-coding downstream 293384 15845588 ~ 15846513 (-)
XLOC_004055 FP016142.1 non-coding downstream 330878 15806392 ~ 15809019 (-)
XLOC_004054 FP016142.7 non-coding downstream 336260 15802450 ~ 15803637 (-)
XLOC_004070 NA non-coding upstream 929022 17081422 ~ 17091195 (-)
XLOC_004071 CR769769.2 non-coding upstream 941353 17093753 ~ 17097933 (-)
XLOC_004072 CR769769.3 non-coding upstream 991909 17144309 ~ 17147461 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000056_00376962_00378136 ARPC4 coding CI01000056 null 376962 ~ 378508 (+)