XLOC_004057 (FP003590.1)


Basic Information

Item Value
gene id XLOC_004057
gene name FP003590.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 15845588 ~ 15846513 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007739
ctgcctttatgttgacaagaaaaaaagaagagaagaagcgcggtcctcttatgacacgactgaatcagctgggtatcgattgtgcagaagtgttgctgtatatgttgttatagttgtaatatttaatactattgtgatattcaagatttgtacattcattcaGCTCTGGATAACtgaaaacagcgattagaccttcagagcggcattaatgcgtcctgaagtaaagcgaaacggctataaactccagcaagatagagtgattatatacagagccatatacctttatctataaataaagtataactatagaaactgtgttcatcttaactgaaagctttgtcatgtttcctggcctcacgcatcgcgcacctgtcagtcagcacgtaactcTCAAAGggtcaaacagaaagcgcacagcacggttacagaaaattttgcgctGAGTCgggacatctggtgaacgcccatccctctctgcgcagccacattaacagtgtgagcaaagcaTCGTATATGCggtgaaaatccggccgctttgacagcattggcaatgtttctgtcgttgtctgttgtcaagcggggttacgttggttttgtttttgatattcctgacacattcagatggtcccttactaagagctctgtgcgagctctcccggctaaacgcatattgcgagggcttaaacgcaGCAATGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098971

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007739 True 696 lncRNA 0.43 2 15845588 15846513

Neighbor

gene id symbol gene type direction distance location
XLOC_004055 FP016142.1 coding downstream 36569 15806392 ~ 15809019 (-)
XLOC_004054 FP016142.7 coding downstream 41951 15802450 ~ 15803637 (-)
XLOC_004053 FP016142.3 coding downstream 45665 15798258 ~ 15799923 (-)
XLOC_004052 FP016142.4 coding downstream 48020 15796093 ~ 15797568 (-)
XLOC_004051 FP016142.5 coding downstream 64665 15775452 ~ 15780923 (-)
XLOC_004058 zgc:173544 coding upstream 168014 16014527 ~ 16021522 (-)
XLOC_004059 CR848761.1 coding upstream 211678 16058191 ~ 16058307 (-)
XLOC_004060 SPATA1 coding upstream 238068 16084581 ~ 16093022 (-)
XLOC_004061 rpf1 coding upstream 248148 16094661 ~ 16115804 (-)
XLOC_004062 NA coding upstream 273499 16120012 ~ 16120290 (-)
XLOC_004019 CR450764.8 misc downstream 3153897 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 3223821 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 3254292 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 3332326 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 3345326 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 280869 16127382 ~ 16127678 (-)
XLOC_004067 AL844563.2 non-coding upstream 797884 16644397 ~ 16644513 (-)
XLOC_004068 AL844563.1 non-coding upstream 822705 16669218 ~ 16675164 (-)
XLOC_004070 NA non-coding upstream 1234909 17081422 ~ 17091195 (-)

Expression


Co-expression Network