RNA id: TCONS_00007730


Basic Information

Item Value
RNA id TCONS_00007730
length 842
lncRNA type lincRNA
GC content 0.37
exon number 2
gene id XLOC_004052
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 15796093 ~ 15797568 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgtaagtacagggaacaaggaggtaacaagagaggaacaaagcttcactttaatttacaaccctcaaatgtggtatttaccctgtaagtacagggaacaaggaggtaacaagagaggaacaaagcttcactttaatttacaaccctcaaatgtggtatttaccctgtaagtacagggaacaaggagggaacaagggaggaacaaagcttcactttaatttacaaccctcaaatgtggtatttaccctgtaagtacagggaacaaggagggaacaaatactgtatttaccctttaactacagggaacaaagagggaagaagctgaactttaacatactagtgtatacttgaacactaagaacagagtaaactacagcagcagtttttattgattgaagaccaaattactagatttttctataaagtatcagctatacatttactgaaatgcaacagttagcccccctgtgcaacagcagtaaagatgcgagcctgttttaatctgcattgaaccctgacggtaggactatgtcatgcaaagttatttgttgatagtgagttatggggacattgatggctttggtgagatcgacgagtaaacataaggtaagtagtgtatggaaatatattttatattgaattgcagatttaaaatacatacagtatacaataagggttcataatttcacaggttgtaaaccttttattcattaaacaccccatataaaacccaagcactgaataagagtactaatgtactcacgcaggtgcatatacagtacatttgcagatagcaataggttgtcaccatccttgcataattctttatatgtatacaatac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000165810

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007728 lncRNA downstream 15170 15775452 ~ 15780923 (-) True XLOC_004051
TCONS_00008782 lncRNA downstream 34222 15756726 ~ 15761871 (-) True XLOC_004050
TCONS_00008460 lncRNA downstream 482494 15311381 ~ 15313599 (-) True XLOC_004048
TCONS_00007722 lncRNA downstream 514191 15269807 ~ 15281902 (-) False XLOC_004047
TCONS_00007715 lncRNA downstream 776566 15018138 ~ 15019527 (-) True XLOC_004045
TCONS_00007731 lncRNA upstream 690 15798258 ~ 15799923 (-) True XLOC_004053
TCONS_00007732 lncRNA upstream 4882 15802450 ~ 15803637 (-) True XLOC_004054
TCONS_00007733 lncRNA upstream 8824 15806392 ~ 15807508 (-) False XLOC_004055
TCONS_00007734 lncRNA upstream 9075 15806643 ~ 15809019 (-) True XLOC_004055
TCONS_00007739 lncRNA upstream 48020 15845588 ~ 15846513 (-) True XLOC_004057
TCONS_00007727 mRNA downstream 360598 15345654 ~ 15435495 (-) True XLOC_004049
TCONS_00007723 mRNA downstream 498910 15270295 ~ 15297183 (-) False XLOC_004047
TCONS_00007735 mRNA upstream 35997 15833565 ~ 15850794 (-) False XLOC_004056
TCONS_00007736 mRNA upstream 35997 15833565 ~ 15875022 (-) False XLOC_004056
TCONS_00007737 mRNA upstream 35997 15833565 ~ 15875054 (-) False XLOC_004056
TCONS_00007738 mRNA upstream 36829 15834397 ~ 15874974 (-) True XLOC_004056
TCONS_00007740 mRNA upstream 216959 16014527 ~ 16021424 (-) False XLOC_004058
TCONS_00007689 other downstream 2313306 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007673 other downstream 3039818 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007664 other downstream 3104402 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 3174326 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 3204797 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007741 other upstream 220315 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 223361 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 260623 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007751 other upstream 329814 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007758 other upstream 535256 16332824 ~ 16336886 (-) False XLOC_004066

Expression Profile

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