RNA id: TCONS_00007715


Basic Information

Item Value
RNA id TCONS_00007715
length 1035
lncRNA type antisense
GC content 0.36
exon number 2
gene id XLOC_004045
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 15018138 ~ 15019527 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGACTTTTTCAAGGCGTTCAGATTTGCGTGCACTAATCCACGTCGTATCCGTATAAACTCGTGAAAGAGAAAGCGAGAAATCTCCTACTGATTCTGTCCACATTCTGAAGTGTTCATCAGATGGGTACATCTCTCACAGGAGGCCACGAAAAACCATACGGcaagatgataaaaaaaaaagttacataactGACGTTACAAGCGCAACTTTAAATAAATGGCAGGtttaataaatcttaatttaaattaatattttattacataagaTATCCTTGTCAAATTTCACCTAATTTGTTGTTACCTTTATTGTGTAACATTTTTCATTTACTTGTAGAACATGCTTAAAGTTAGTTTTCCAGTCTTGTTTgattatataatcatatattcttcaaaagaaaatctattacatttgttctctttttgcTGTTTATGTTAATTGTTAAGATACAGCAATGTTTCCCTAAGCCTGTATGAAATTTTTATTTCtgcataataatgattaataataattgttattgataACAATcccataataatacaaataaaatagcagGGACAGAAGCAATAACACCTAATACCATCAGTAACTTGATAACCCTACCTGATAGCCTTTCTAATGTTGGCACATTGGTACATCTGCACAAAGATGTTGGACAGCTGCTTGAAAATCTTGCTTTAGAGAAATTTTACACTCGAAAAATACAAAACCCCATGTTCTGCTGCATGCTGGACTTCAATTGTTTTTGCCATCACATCCCTCAGTGCTGCAGTCAGACTGGAACAGAGTTGTGAGGTAAGGCTGTCCATGCCTGAGAAACCGATTCATACTAAAGATGAAGAGACCACACCAACATCTGGCTCAGATAAGGACACCCAGGCAGGTGGAGGGATGCAGGGTCTTGTCCACGGCACTACAGCATCTTCAACATTTCCTTCATCAGCACACTGCTGTTCTTTATCATCATCACTGCACACACCAGTCTGAGGACATTTCAGATTATGCAAAGCTTTTAATAAAGAAGTCATTTAACAGC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000170607

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008781 lncRNA downstream 144008 14873329 ~ 14874130 (-) True XLOC_004042
TCONS_00007702 lncRNA downstream 188814 14827374 ~ 14829324 (-) True XLOC_004041
TCONS_00008780 lncRNA downstream 259050 14754905 ~ 14759088 (-) True XLOC_004039
TCONS_00008779 lncRNA downstream 259058 14754905 ~ 14759080 (-) False XLOC_004039
TCONS_00007698 lncRNA downstream 322274 14693481 ~ 14695864 (-) True XLOC_004038
TCONS_00007722 lncRNA upstream 250280 15269807 ~ 15281902 (-) False XLOC_004047
TCONS_00008460 lncRNA upstream 291854 15311381 ~ 15313599 (-) True XLOC_004048
TCONS_00008782 lncRNA upstream 737199 15756726 ~ 15761871 (-) True XLOC_004050
TCONS_00007728 lncRNA upstream 755925 15775452 ~ 15780923 (-) True XLOC_004051
TCONS_00007730 lncRNA upstream 776566 15796093 ~ 15797568 (-) False XLOC_004052
TCONS_00007714 mRNA downstream 16426 14989374 ~ 15001712 (-) True XLOC_004044
TCONS_00007706 mRNA downstream 16436 14955484 ~ 15001702 (-) False XLOC_004044
TCONS_00007708 mRNA downstream 16436 14955484 ~ 15001702 (-) False XLOC_004044
TCONS_00007710 mRNA downstream 16436 14955484 ~ 15001702 (-) False XLOC_004044
TCONS_00007709 mRNA downstream 16436 14955484 ~ 15001702 (-) False XLOC_004044
TCONS_00007716 mRNA upstream 48780 15068307 ~ 15090564 (-) False XLOC_004046
TCONS_00007717 mRNA upstream 49089 15068616 ~ 15090118 (-) True XLOC_004046
TCONS_00007718 mRNA upstream 206007 15225534 ~ 15296805 (-) False XLOC_004047
TCONS_00007720 mRNA upstream 206081 15225608 ~ 15297210 (-) False XLOC_004047
TCONS_00007719 mRNA upstream 206081 15225608 ~ 15297210 (-) False XLOC_004047
TCONS_00007689 other downstream 1535351 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007673 other downstream 2261863 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007664 other downstream 2326447 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 2396371 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 2426842 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007741 other upstream 998356 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 1001402 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 1038664 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007751 other upstream 1107855 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007758 other upstream 1313297 16332824 ~ 16336886 (-) False XLOC_004066

Expression Profile

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