RNA id: TCONS_00008779


Basic Information

Item Value
RNA id TCONS_00008779
length 3619
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_004039
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14754905 ~ 14759088 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGTTTTCTTACATTTGTGTGCTCATTCTATAACGtgtaacaaataaaacaaaaaaagggaaaaaaactgTCTCAGTTatatttaaaacatgaataaCTTGCTGACACATAATACTAGTTTTACTAATTGTATGAAATACTaattaattgtcactttaaatcTATATGCTTTACCACTATTTTTCAAACCACTACGTTTTACTTATTTGTCTGCAATAAATTTTTAAACATGacgttttatatattttaataagtacaggtTAAAATTTGTTAATTGTCATTCTGTCTCGTTACTGAAACTAAATAATATTCTTATTACATTTTTCTAATGTTACTGTGAGAATGTTGTtactttggtttaaaaaaaatactgtaaaatgttttctaagAGAACAATGTTTAATCTGGTGCCTTTTCAAtaatcttaaaaatgtttttaaaatgttgcagATAAAGGGTTCTATTTTGACCATCCTTGGGCAAGTGCAAAGTACTGggtgcaaacgcattaagggcggtCAGAATCTACTTTTGCAATTTTAAGAGTGGAAAAATCCGTTTTGCGCCATGGCACATAGTcttacagggttgagcttattctcttaatgagttataggtgtgttttgagaataaaccaatcagagtctcatcagATTTTCAAAACATTGCTAGAATGTTCTTGTTCATTgttttggaaaaagaaaaaaacattttttttgcatattcatTGGATATTACatcaaaatattttcttcaaAACAATAACACAACTTCCAGGGAATGTTAGCCAAAATTCTGAGAATGTTCCCTTCTGGGGCACCACAAGAAAATGTGGCAACACACATCTGCCAATAGTGTGAGAGCAATCCAGTTGCTGTCCGTTATTGTGACTGTCGACCACGCCCTTTCTACTGTGCTGATTGTGATGTCAGTATGCACACCAGAAATGTTCTCCATAACTGAGATGCCATGACTGCTGGATTCTACCAGTCATTGCCTCTAACAACCTTTGTTGTAGATAAGGCTCTTTCCCATTCTGGTAAGTCCTGGCTTATGACTGTACAACATAAATATCATTCTGAGAATTGTTAGGCCTTATAAGCTTAACTATTTAAATAatgcctttttgttttatattgtttgatAATGAATTTATAACAATTTTCAGTCAGCTTTTTGAGCAACTATTGTATACTTTTTCAGCAATGTTCTTCATTACCATTGAACCATTACAATGTTGTATTACTCAGTCACATGATCTTAATTCACATGTTTGATTTTCCAGTATGTCTTGTACCTGTGAAGATTGCTGACAATATTTGTCACAGAGGGTCAGCCCAAGGAAAGAATGTTGCTGTGATCACAATGAATTATTATAAGGTAAAAGAGTCGGACTTGTAACccgaaggtcactggttcaattcCTGCACCGGCAGGAATTAAAGagaaaTGAAGATGGCAGCACCAGGACTGTCCTGCCAAGCATTTTTAAGAATGCTGGATCAGCGAACTGTTCGTTTTGTTCATGTGagtattgaatttatttttcctacAGTGTTGTTAATCCCTTTGTATTGTAGGTTGAAAAGTTGTTTgatgctaatttatgttatacAATATTAGCCATTGTTTTTCTTACTTCTAATAGACTGGCAAGTGCTTCCCCAGACGGTTTTCAAAAAAGTTGTGGACAGGGCCGATACAGTGGACAAAATCTGCAAGGAAGAGCCCTTCATCTTTCCTGCCTGCACCCCAGATATGCTGGCAGTTTCAGTAAATGGAAATCACAAGCATTGCCATCTCAAGAATGCAGCTAGGTACTCCAAACTGTGTTTGATATCACACTGTtgaaacaatattatttaaaaaatagctgTTTTTTGTGCaccaagtaaaattaaataacagttacaacagattattattattattttttttatctaagaaACAGGCCATCTTTATAGCTAAGGATGTAGATGTGACACGATTTGTAGACTATATTCACAAGATAACCAAACATGTAAAATCACAGATGATTAGACTACATACAGGACTACATTTATCTCCTACTCAACAGTATGTTTAGAAGAGTCTTATTTTTTCTTCAACCATTTTCCATATTATAGGTCAGTGGAAGAGGTGTTTGTGGAGAGAAGTGGTCAGCAGCCAGAGAGACCTCCCAAAGATCTGCCAGCAATGTAGATGAGGAGGGATTAGAGCTTGTGGTGTTTTTCGGCACTGTGTGCTTTAAATACTGTAGGGGGAAATTTTTGCATATCCCCTGTACCTACAAAAAAAAGCTGGCCAGTAGGCAAATCACATTTTTTGTATGTATGTGACCTGCAAATATTGGCCCTACCTCCAAAGAGTTGCAAAAAACTGCCCAGATCTCCAGTACCTTCTTAACATGTGGCCCTTCCTTTCAGTATTCCATGCCAAAGCCCATGATTAAATGCGAGGTAGGTGAACTTTGCTTTGTGAATATCAAATTCGGGCATATGCAAATGAATGTAAAAACTTTCTtagcattatttacattattttttcattactacTAATCAGGTGAAATAGAGTGGGACGTATCAGGACAGGGCTGGTTTAACACTAGGGGAGGAGGTGGAACAGTGCAATGCTTTTCTCTCTAGGAATGCAGTGACCATAAAAGATGTCCAAAGTAGGTAAAATGACCACATATTTTACTTCACTAGTTTCATCATAACATATTAAGTAGGGGGAATATAGTAACATTACTTTCTGTGTTTGCAGGATACACAGACATGCTGACTTTCATGGCCATGCACTGGAATCAGCAAAAGTTCAACAATTTGGCCACCGCATTAACCCATCGATATCAGAAAGTAATGAAATCAGTAGAATTTATTTTAGATGTTCAGTAATGtttgttatttgtgttttgaatCTTTACATTAAACAGTTTGTTCTTGTTTTTGTCCTATCTGTTATAACCTGCCATTGCAGACCACGAAAGCTCTACAAAGCCAGGTGCAAAACCTAGAATCTATGAAAGTCGAACTGGCAGTGACAGAGAGCCAGTTAGAAGACTGGGTCAATGATGTAAAGGAGTGGGCAGACGGTGAGGCTAGTATTTATATATTTCCAGTAATACATTTAGTTGTGAATAATTGTAATTGATAAATTGTTACTGTTATTGTAATTTCGTCCTATTtctttttaacaacaaaaaccaCAAATGATGTTAATGTTTTGGCCAGCCAAATTGAGGTGCTGGTGGCAAGTATCAAAAGATGTTCTCAGCGTCTCTATAAAGATACAGATGGGGAAAAAAGTCGTGCCACAATCCGCCACAAGATCAGGGAGGAAAAGGGGATTCTGACATTAGTTGTAGAGAAATACAACAGAATGGTTCCAAACACAGACACTCTGTGCTTGGAAACCATTTTGTCTGGTGAGACAGCTTGGCCATGGCAGCTGCCCTGTCTCATTTTCCATCCAGCTTGTACCTACTTCTGCAAAGTGTTAGTTTGTGTTAAAGCATATCACACTAGAAAATAAATTCAGTTAGCTCCTTACAAAGCTACATGTATTTAAAAGAAAGGTAAAGGAGagtcaaaagtaaaataaataaataaataaataa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007698 lncRNA downstream 59041 14693481 ~ 14695864 (-) True XLOC_004038
TCONS_00008778 lncRNA downstream 322705 14430922 ~ 14432200 (-) True XLOC_004036
TCONS_00007696 lncRNA downstream 443668 14308897 ~ 14311237 (-) True XLOC_004035
TCONS_00008777 lncRNA downstream 443822 14308897 ~ 14311083 (-) False XLOC_004035
TCONS_00008776 lncRNA downstream 606479 14147663 ~ 14148426 (-) True XLOC_004034
TCONS_00007702 lncRNA upstream 68294 14827374 ~ 14829324 (-) True XLOC_004041
TCONS_00008781 lncRNA upstream 114249 14873329 ~ 14874130 (-) True XLOC_004042
TCONS_00007715 lncRNA upstream 259058 15018138 ~ 15019527 (-) True XLOC_004045
TCONS_00007722 lncRNA upstream 510727 15269807 ~ 15281902 (-) False XLOC_004047
TCONS_00008460 lncRNA upstream 552301 15311381 ~ 15313599 (-) True XLOC_004048
TCONS_00007697 mRNA downstream 85879 14667066 ~ 14669026 (-) True XLOC_004037
TCONS_00007694 mRNA downstream 652747 14071689 ~ 14102158 (-) False XLOC_004033
TCONS_00007695 mRNA downstream 652774 14072782 ~ 14102131 (-) True XLOC_004033
TCONS_00007691 mRNA downstream 1136493 13616015 ~ 13618412 (-) True XLOC_004031
TCONS_00007690 mRNA downstream 1143773 13605623 ~ 13611132 (-) True XLOC_004030
TCONS_00007699 mRNA upstream 12828 14771908 ~ 14813029 (-) False XLOC_004040
TCONS_00007700 mRNA upstream 13518 14772598 ~ 14789918 (-) False XLOC_004040
TCONS_00007701 mRNA upstream 29942 14789022 ~ 14813063 (-) True XLOC_004040
TCONS_00007703 mRNA upstream 156700 14915780 ~ 14924138 (-) True XLOC_004043
TCONS_00007706 mRNA upstream 196404 14955484 ~ 15001702 (-) False XLOC_004044
TCONS_00007689 other downstream 1272118 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007673 other downstream 1998630 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007664 other downstream 2063214 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 2133138 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 2163609 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007741 other upstream 1258803 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 1261849 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 1299111 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007751 other upstream 1368302 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007758 other upstream 1573744 16332824 ~ 16336886 (-) False XLOC_004066

Expression Profile

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