RNA id: TCONS_00007718


Basic Information

Item Value
RNA id TCONS_00007718
length 1969
RNA type mRNA
GC content 0.47
exon number 17
gene id XLOC_004047
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 15225534 ~ 15297210 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTGAAATAGGTTTCATCCGCGTGACCCGGAAGTTCTCTCAGCTGGGTGACGCTGCATTAGGCGACATGGCTAATCTCTGTGTGTTCAGCGTGTTGGTCCTGTCCTTGGTTATTGAGACCCAGACTCTAACCCCATCCCATCATCTGACCACCACTGATGTGGCCAGACTGCAGGCTGTATTGAGCCAGCCCCTCACTGATCTCAAGTCTGCCTATTACTCTGTTGTTGGACTTAGGAAGCTGGGGATCTTTGTTGCAGATGCAGATGAGACATGCAGATTTATCAAGTCAAACCTTGACCCCTCTAGTGTCGAGTCactgttttatgcagcagaatCTAGCCAAGCTCTTACTGGATGTGAGATTCTTGTGTCAAATGACACGCGTGATTTGTTGTTGGCCACAGTGAGTGAGGACTCCACTGTCTCTCAGATCCATCACTCTGTGAGTGCTCTCAGCTCTCTTGGATTACCTCTGGCCTCACAGGAAGTAGTCAGTGCCCTTAAATCTCGTATCTCCAAAGAAGACAATGTCTTAGCAATCATTCTGGCACTGCAGACTGCAGCTCGTCTGTCTCAGCAAGCTGAACTTGGTGACATCTTGGAAGAAATTGAGGACCTGGCTGCCCGTTTAGATGATCTAGGTGGAGTGTATCTTCAGTTTGAAGATGGCCTGGAGGCCACAGCACTGTTTGTTACCGCTGCATACGCCCTGTCTGATCATGTGGATGTTGAACCTCCCTTGAAAGAGGAACAGGTGATTCAACTGGTGAATTCTATCTTCAGTAAGAAATCTTGGGACTCTCTCTCGGAGGCATTCAGTGTGGTCAGTGCGGCAGCAGCTCTTTCCAACAATCACTTCCATGTGCCTGTTATTGCTATTGCACAGGGCCCCGCAGCTGTATCCCACAGTCAACCCTTTCTTCAGCTTCAGGTGACAGATGTCTTGTGCCAGCCATTGAGTTCAGCCAGCGTGCTGGTGGAGTCTGCCAGTTCTGTGTCCTCAAAATCTGCAATCCTAAGCCAGGCACCCTTTACCTTCAGAGATGGGATTTTTGAATTGAATTTCATGGCCAACCAACCAACGAGTGGCTATTACCAGTTCTCTGTTGCCATTGCTGGTGACCGCCGATTTGTTGCCAACCATGTTGAGCTCAAAGTAAAGGTCTCCACCAGGGTTGCAATTAACAATATGGATTTATCTGTGGTGGACAAGGACCAGAGCATTGGCCCCAAAACAACAAGAGTTGAATATCCAACTAAAGCCAAATCATCTTTTATGGCTGATAGCCATCAAAACTTTGTAATGACCTTCCAGTTAGTAGATGAGATCACAGGCGTGGAACTTACCCCTCATCAGACTTTTGTAAGGTTGCACAACCAGAAGACAGGTCAGGAAGTTGTGTTTGTGGCTGAACCTGACAGTAAGAACTTGTATAAGTTTGAGCTGGACACAGCTGAAAGAAAGGCAGAGTTTGACTCTATCTCTGGCACCTATGCTCTTTACTTGATGGTGGGAGATGCTACACTGGAGAACCCCGTTTTGTGGAATGTGGCTGATGTTGTGCTAAAGTTCTTGGATGAAGAGGCACCTTCAACAATTCAGGCTAAAACTTTGTACATACCTAAACCAGAAATCAAGCATCTGTTTAGAGAACCAGAAAAGAAGCCACCCACAGTTGTATCTAACACTTTTACTGCCTTGGTCCTTTCTCCGTTTCTTCTGCTCCTTATACTGTGGTTTAAACTAGGAGCAAACATCTCAAACTTCACACTGTCACCCAGCACTATTCTTTTTCACATAGGCCATGCAACGATGTTGGGCCTGATGTATGTATACTGGACTCACTTGAACATGTTTCAGACCCTTAAGTATCTGGCTATCATAGGCAGCCTGACATTCTTGGCTGGGAACCGTATGCTGGCACAGAAAGCAGTGAAAAGCACCATCATAGTTTGTGCTTCATAG

Function

GO:

id name namespace
GO:0006487 protein N-linked glycosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0008250 oligosaccharyltransferase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko00513 Various types of N-glycan biosynthesis
ko04141 Protein processing in endoplasmic reticulum
ko03050 Proteasome
ko05169 Epstein-Barr virus infection
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-030131-7928 Predicted to be involved in protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of oligosaccharyltransferase complex. Is expressed in female organism. Orthologous to human RPN2 (ribophorin II).

Ensembl:

ensembl_id ENSDART00000124968

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007715 lncRNA downstream 206007 15018138 ~ 15019527 (-) True XLOC_004045
TCONS_00008781 lncRNA downstream 351404 14873329 ~ 14874130 (-) True XLOC_004042
TCONS_00007702 lncRNA downstream 396210 14827374 ~ 14829324 (-) True XLOC_004041
TCONS_00008780 lncRNA downstream 466446 14754905 ~ 14759088 (-) True XLOC_004039
TCONS_00008779 lncRNA downstream 466454 14754905 ~ 14759080 (-) False XLOC_004039
TCONS_00008460 lncRNA upstream 14576 15311381 ~ 15313599 (-) True XLOC_004048
TCONS_00008782 lncRNA upstream 459921 15756726 ~ 15761871 (-) True XLOC_004050
TCONS_00007728 lncRNA upstream 478647 15775452 ~ 15780923 (-) True XLOC_004051
TCONS_00007730 lncRNA upstream 499288 15796093 ~ 15797568 (-) False XLOC_004052
TCONS_00007729 lncRNA upstream 499288 15796093 ~ 15797568 (-) True XLOC_004052
TCONS_00007716 mRNA downstream 134970 15068307 ~ 15090564 (-) False XLOC_004046
TCONS_00007717 mRNA downstream 135416 15068616 ~ 15090118 (-) True XLOC_004046
TCONS_00007714 mRNA downstream 223822 14989374 ~ 15001712 (-) True XLOC_004044
TCONS_00007704 mRNA downstream 223832 14955484 ~ 15001702 (-) False XLOC_004044
TCONS_00007727 mRNA upstream 48849 15345654 ~ 15435495 (-) True XLOC_004049
TCONS_00007735 mRNA upstream 536760 15833565 ~ 15850794 (-) False XLOC_004056
TCONS_00007736 mRNA upstream 536760 15833565 ~ 15875022 (-) False XLOC_004056
TCONS_00007737 mRNA upstream 536760 15833565 ~ 15875054 (-) False XLOC_004056
TCONS_00007738 mRNA upstream 537592 15834397 ~ 15874974 (-) True XLOC_004056
TCONS_00007689 other downstream 1742747 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007673 other downstream 2469259 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007664 other downstream 2533843 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 2603767 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 2634238 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007741 other upstream 721078 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 724124 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 761386 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007751 other upstream 830577 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007758 other upstream 1036019 16332824 ~ 16336886 (-) False XLOC_004066

Expression Profile

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