Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_004018 |
| gene name | zgc:91850 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 12688642 ~ 12690539 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| zgc:91850 | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Is expressed in Kupffer's vesicle; forerunner cell group; nervous system; and pronephric duct. |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040801-211 | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Is expressed in Kupffer's vesicle; forerunner cell group; nervous system; and pronephric duct. |
| ensembl_id | ENSDARG00000110231 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00007662 | False | 981 | mRNA | 0.50 | 6 | 12688642 | 12690539 |
| TCONS_00007663 | True | 525 | mRNA | 0.52 | 5 | 12689047 | 12690393 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_004017 | CR450764.14 | coding | downstream | 15005 | 12672330 ~ 12673637 (-) |
| XLOC_004016 | CR450764.3 | coding | downstream | 54625 | 12632395 ~ 12634017 (-) |
| XLOC_004014 | CR450764.17 | coding | downstream | 68853 | 12610576 ~ 12619789 (-) |
| XLOC_004012 | zgc:91850 | coding | downstream | 98694 | 12588634 ~ 12589948 (-) |
| XLOC_004011 | CABZ01022569.2 | coding | downstream | 114962 | 12572306 ~ 12573680 (-) |
| XLOC_004020 | CR450764.10 | coding | upstream | 12984 | 12703523 ~ 12739532 (-) |
| XLOC_004021 | zgc:174353 | coding | upstream | 13348 | 12703887 ~ 12705754 (-) |
| XLOC_004022 | si:ch211-209f22.3 | coding | upstream | 24525 | 12715064 ~ 12717004 (-) |
| XLOC_004023 | zrsr2 | coding | upstream | 41708 | 12732247 ~ 12744082 (-) |
| XLOC_004024 | CR450764.5 | coding | upstream | 65604 | 12756143 ~ 12756275 (-) |
| XLOC_004015 | CR450764.4 | misc | downstream | 66875 | 12621518 ~ 12621767 (-) |
| XLOC_004013 | CABZ01022569.1 | misc | downstream | 97346 | 12590999 ~ 12591296 (-) |
| XLOC_004008 | BX000700.19 | misc | downstream | 175380 | 12512966 ~ 12513262 (-) |
| XLOC_004006 | BX000700.27 | misc | downstream | 188380 | 12499966 ~ 12500262 (-) |
| XLOC_004000 | BX000700.23 | misc | downstream | 250262 | 12438084 ~ 12438380 (-) |
| XLOC_004019 | CR450764.8 | misc | upstream | 856 | 12691395 ~ 12691691 (-) |
| XLOC_004063 | CR854846.1 | misc | upstream | 3436843 | 16127382 ~ 16127678 (-) |
| XLOC_003997 | NA | non-coding | downstream | 197363 | 12429383 ~ 12491279 (-) |
| XLOC_003998 | NA | non-coding | downstream | 223233 | 12430155 ~ 12465409 (-) |
| XLOC_004002 | NA | non-coding | downstream | 224156 | 12463700 ~ 12464486 (-) |
| XLOC_003977 | NA | non-coding | downstream | 475211 | 12213149 ~ 12213431 (-) |
| XLOC_003975 | NA | non-coding | downstream | 502498 | 12185854 ~ 12186144 (-) |
| XLOC_004029 | BX530062.1 | non-coding | upstream | 792132 | 13482671 ~ 13482787 (-) |
| XLOC_004032 | CR555295.1 | non-coding | upstream | 1107914 | 13798453 ~ 13800802 (-) |
| XLOC_004034 | NA | non-coding | upstream | 1457124 | 14147663 ~ 14148426 (-) |
| XLOC_004035 | NA | non-coding | upstream | 1618358 | 14308897 ~ 14311237 (-) |
