XLOC_004012 (zgc:91850)


Basic Information

Item Value
gene id XLOC_004012
gene name zgc:91850
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12588634 ~ 12589948 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007655
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGCGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCTGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGCCATCAAGCTGGACCATCAGCTAAATCTTCTCAAACATGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatttggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCACAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

symbol description
zgc:91850 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Is expressed in Kupffer's vesicle; forerunner cell group; nervous system; and pronephric duct.

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-211 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Is expressed in Kupffer's vesicle; forerunner cell group; nervous system; and pronephric duct.

Ensembl:

ensembl_id ENSDARG00000113079

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007655 True 525 mRNA 0.52 5 12588634 12589948

Neighbor

gene id symbol gene type direction distance location
XLOC_004011 CABZ01022569.2 coding downstream 14954 12572306 ~ 12573680 (-)
XLOC_004010 zgc:174354 coding downstream 39524 12547191 ~ 12549110 (-)
XLOC_004009 zgc:174354 coding downstream 58330 12528381 ~ 12530304 (-)
XLOC_004007 si:dkey-27d5.3 coding downstream 76512 12510223 ~ 12512122 (-)
XLOC_004005 si:dkey-27d5.4 coding downstream 89518 12497180 ~ 12499116 (-)
XLOC_004014 CR450764.17 coding upstream 20628 12610576 ~ 12619789 (-)
XLOC_004016 CR450764.3 coding upstream 42447 12632395 ~ 12634017 (-)
XLOC_004017 CR450764.14 coding upstream 82382 12672330 ~ 12673637 (-)
XLOC_004018 zgc:91850 coding upstream 98694 12688642 ~ 12690539 (-)
XLOC_004020 CR450764.10 coding upstream 113575 12703523 ~ 12739532 (-)
XLOC_004008 BX000700.19 misc downstream 75372 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 88372 12499966 ~ 12500262 (-)
XLOC_004000 BX000700.23 misc downstream 150254 12438084 ~ 12438380 (-)
XLOC_003995 BX000700.6 misc downstream 192820 12395518 ~ 12395814 (-)
XLOC_003991 BX000700.22 misc downstream 237079 12351259 ~ 12351555 (-)
XLOC_004013 CABZ01022569.1 misc upstream 1051 12590999 ~ 12591296 (-)
XLOC_004015 CR450764.4 misc upstream 31570 12621518 ~ 12621767 (-)
XLOC_004019 CR450764.8 misc upstream 101447 12691395 ~ 12691691 (-)
XLOC_004063 CR854846.1 misc upstream 3537434 16127382 ~ 16127678 (-)
XLOC_003997 NA non-coding downstream 97355 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding downstream 123225 12430155 ~ 12465409 (-)
XLOC_004002 NA non-coding downstream 124148 12463700 ~ 12464486 (-)
XLOC_003977 NA non-coding downstream 375203 12213149 ~ 12213431 (-)
XLOC_003975 NA non-coding downstream 402490 12185854 ~ 12186144 (-)
XLOC_004024 CR450764.5 non-coding upstream 166195 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 892723 13482671 ~ 13482787 (-)
XLOC_004032 CR555295.1 non-coding upstream 1208505 13798453 ~ 13800802 (-)
XLOC_004034 NA non-coding upstream 1557715 14147663 ~ 14148426 (-)
XLOC_004035 NA non-coding upstream 1718949 14308897 ~ 14311237 (-)

Expression


Co-expression Network