RNA id: TCONS_00007655


Basic Information

Item Value
RNA id TCONS_00007655
length 525
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_004012
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12588634 ~ 12589948 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGCGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCTGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGCCATCAAGCTGGACCATCAGCTAAATCTTCTCAAACATGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatttggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCACAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-211 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Is expressed in Kupffer's vesicle; forerunner cell group; nervous system; and pronephric duct.

Ensembl:

ensembl_id ENSDART00000190804

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008772 lncRNA downstream 97355 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00008773 lncRNA downstream 123225 12430155 ~ 12465409 (-) True XLOC_003998
TCONS_00008774 lncRNA downstream 124148 12463700 ~ 12464486 (-) True XLOC_004002
TCONS_00008771 lncRNA downstream 158525 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00007602 lncRNA downstream 368665 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00007671 lncRNA upstream 144183 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007672 lncRNA upstream 149228 12739176 ~ 12741136 (-) True XLOC_004023
TCONS_00007692 lncRNA upstream 1208505 13798453 ~ 13800802 (-) False XLOC_004032
TCONS_00008775 lncRNA upstream 1208544 13798492 ~ 13800113 (-) False XLOC_004032
TCONS_00007693 lncRNA upstream 1209728 13799676 ~ 13800802 (-) True XLOC_004032
TCONS_00007654 mRNA downstream 14954 12572306 ~ 12573680 (-) True XLOC_004011
TCONS_00007651 mRNA downstream 39524 12547191 ~ 12549110 (-) False XLOC_004010
TCONS_00007652 mRNA downstream 39693 12547289 ~ 12548941 (-) False XLOC_004010
TCONS_00007653 mRNA downstream 39693 12547599 ~ 12548941 (-) True XLOC_004010
TCONS_00007649 mRNA downstream 58330 12528381 ~ 12530304 (-) False XLOC_004009
TCONS_00007657 mRNA upstream 20628 12610576 ~ 12619789 (-) True XLOC_004014
TCONS_00007659 mRNA upstream 42447 12632395 ~ 12634017 (-) False XLOC_004016
TCONS_00007660 mRNA upstream 42757 12632705 ~ 12634017 (-) True XLOC_004016
TCONS_00007661 mRNA upstream 82382 12672330 ~ 12673637 (-) True XLOC_004017
TCONS_00007662 mRNA upstream 98694 12688642 ~ 12690539 (-) False XLOC_004018
TCONS_00007648 other downstream 75372 12512966 ~ 12513262 (-) True XLOC_004008
TCONS_00007645 other downstream 88372 12499966 ~ 12500262 (-) True XLOC_004006
TCONS_00007634 other downstream 150254 12438084 ~ 12438380 (-) True XLOC_004000
TCONS_00007628 other downstream 192820 12395518 ~ 12395814 (-) True XLOC_003995
TCONS_00007621 other downstream 237079 12351259 ~ 12351555 (-) True XLOC_003991
TCONS_00007656 other upstream 1051 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007658 other upstream 31570 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007664 other upstream 101447 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007673 other upstream 166195 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007689 other upstream 892723 13482671 ~ 13482787 (-) True XLOC_004029

Expression Profile

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