RNA id: TCONS_00007653


Basic Information

Item Value
RNA id TCONS_00007653
length 525
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_004010
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12547191 ~ 12549110 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTTAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACATGTCGGTCATCATCAGACGGGTCCCTGCTGCTGGACTGAAGTCCTCAAACAGAAGATTTGTTGgCCATCAAGCTGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCATAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-8 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000179919

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008772 lncRNA downstream 56320 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00008773 lncRNA downstream 82190 12430155 ~ 12465409 (-) True XLOC_003998
TCONS_00008774 lncRNA downstream 83113 12463700 ~ 12464486 (-) True XLOC_004002
TCONS_00008771 lncRNA downstream 117490 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00007602 lncRNA downstream 327630 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00007671 lncRNA upstream 185190 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007672 lncRNA upstream 190235 12739176 ~ 12741136 (-) True XLOC_004023
TCONS_00007692 lncRNA upstream 1249512 13798453 ~ 13800802 (-) False XLOC_004032
TCONS_00008775 lncRNA upstream 1249551 13798492 ~ 13800113 (-) False XLOC_004032
TCONS_00007693 lncRNA upstream 1250735 13799676 ~ 13800802 (-) True XLOC_004032
TCONS_00007649 mRNA downstream 17295 12528381 ~ 12530304 (-) False XLOC_004009
TCONS_00007650 mRNA downstream 17476 12528789 ~ 12530123 (-) True XLOC_004009
TCONS_00007646 mRNA downstream 35477 12510223 ~ 12512122 (-) False XLOC_004007
TCONS_00007647 mRNA downstream 35658 12510628 ~ 12511941 (-) True XLOC_004007
TCONS_00007643 mRNA downstream 48483 12497180 ~ 12499116 (-) False XLOC_004005
TCONS_00007654 mRNA upstream 23365 12572306 ~ 12573680 (-) True XLOC_004011
TCONS_00007655 mRNA upstream 39693 12588634 ~ 12589948 (-) True XLOC_004012
TCONS_00007657 mRNA upstream 61635 12610576 ~ 12619789 (-) True XLOC_004014
TCONS_00007659 mRNA upstream 83454 12632395 ~ 12634017 (-) False XLOC_004016
TCONS_00007660 mRNA upstream 83764 12632705 ~ 12634017 (-) True XLOC_004016
TCONS_00007648 other downstream 34337 12512966 ~ 12513262 (-) True XLOC_004008
TCONS_00007645 other downstream 47337 12499966 ~ 12500262 (-) True XLOC_004006
TCONS_00007634 other downstream 109219 12438084 ~ 12438380 (-) True XLOC_004000
TCONS_00007628 other downstream 151785 12395518 ~ 12395814 (-) True XLOC_003995
TCONS_00007621 other downstream 196044 12351259 ~ 12351555 (-) True XLOC_003991
TCONS_00007656 other upstream 42058 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007658 other upstream 72577 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007664 other upstream 142454 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007673 other upstream 207202 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007689 other upstream 933730 13482671 ~ 13482787 (-) True XLOC_004029

Expression Profile

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