RNA id: TCONS_00007650


Basic Information

Item Value
RNA id TCONS_00007650
length 525
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_004009
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12528381 ~ 12530304 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCTGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAAAAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatttggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCATAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-8 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000182651

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008772 lncRNA downstream 37510 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00008773 lncRNA downstream 63380 12430155 ~ 12465409 (-) True XLOC_003998
TCONS_00008774 lncRNA downstream 64303 12463700 ~ 12464486 (-) True XLOC_004002
TCONS_00008771 lncRNA downstream 98680 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00007602 lncRNA downstream 308820 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00007671 lncRNA upstream 204008 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007672 lncRNA upstream 209053 12739176 ~ 12741136 (-) True XLOC_004023
TCONS_00007692 lncRNA upstream 1268330 13798453 ~ 13800802 (-) False XLOC_004032
TCONS_00008775 lncRNA upstream 1268369 13798492 ~ 13800113 (-) False XLOC_004032
TCONS_00007693 lncRNA upstream 1269553 13799676 ~ 13800802 (-) True XLOC_004032
TCONS_00007646 mRNA downstream 16667 12510223 ~ 12512122 (-) False XLOC_004007
TCONS_00007647 mRNA downstream 16848 12510628 ~ 12511941 (-) True XLOC_004007
TCONS_00007643 mRNA downstream 29673 12497180 ~ 12499116 (-) False XLOC_004005
TCONS_00007644 mRNA downstream 29855 12497585 ~ 12498934 (-) True XLOC_004005
TCONS_00007641 mRNA downstream 45487 12481385 ~ 12483302 (-) False XLOC_004004
TCONS_00007651 mRNA upstream 17068 12547191 ~ 12549110 (-) False XLOC_004010
TCONS_00007652 mRNA upstream 17166 12547289 ~ 12548941 (-) False XLOC_004010
TCONS_00007653 mRNA upstream 17476 12547599 ~ 12548941 (-) True XLOC_004010
TCONS_00007654 mRNA upstream 42183 12572306 ~ 12573680 (-) True XLOC_004011
TCONS_00007655 mRNA upstream 58511 12588634 ~ 12589948 (-) True XLOC_004012
TCONS_00007648 other downstream 15527 12512966 ~ 12513262 (-) True XLOC_004008
TCONS_00007645 other downstream 28527 12499966 ~ 12500262 (-) True XLOC_004006
TCONS_00007634 other downstream 90409 12438084 ~ 12438380 (-) True XLOC_004000
TCONS_00007628 other downstream 132975 12395518 ~ 12395814 (-) True XLOC_003995
TCONS_00007621 other downstream 177234 12351259 ~ 12351555 (-) True XLOC_003991
TCONS_00007656 other upstream 60876 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007658 other upstream 91395 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007664 other upstream 161272 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007673 other upstream 226020 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007689 other upstream 952548 13482671 ~ 13482787 (-) True XLOC_004029

Expression Profile

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