RNA id: TCONS_00007674


Basic Information

Item Value
RNA id TCONS_00007674
length 4523
RNA type mRNA
GC content 0.39
exon number 9
gene id XLOC_004025
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12782296 ~ 12802123 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTCTAAGTGTTTCGTCACAACATGGCGACGCGCTCAGACGCCAGGCACGAattaaacactgaaaacacacagGGCACTGAAGACATGGAGGAGATCATTGGTGTCTGTGGTTTAGAGGCCAGAGGACTGGTTGAAGGGAGCAGTTCACCTCCAGATGTGGAGACCCCGTCCCAGGATAACGTGCTGGATTTTGCGGGCCTGGTGAGCAGTGAGGAGGAGAGAGGGGAGACACCAGGACGTGAGGACAGCACCCCTGACCCCCTCGATGTGGAGTTGGATCCTAACGCTGAGAAAACCAAGGACCAAAAGGAATTTGgtaAAGAGGTTTTGTTGCTGATGCAGGCACTTCATACCTTAGCCACCCCTGAAGAGAAACTTGCTGCCCTTTGTAAGAAATATGCAGACCTGCTGGAGGAGAGTCGCAGCATGCAAAAGCAGGTGAAGCTGTTGCAGAAGAAGCAGAACCAGGTGCTGAAGGAGAAGATCCACCTGCAGAGCGAACACAGCAAGGCCGTCCTGGCACGCAGTAAACTAGAGAGCCTGTGCAGAGAACTTCAGCGCCATAACAAAACCCTGAAGGAGGAGAACGCTCAGAGGTTCAGGGAGTACGAGGAGCGGCGCAAGGAGGCAACTCTGCACTTTCAGATGACACTCAATGAGATCGAGGCTCAGATGGAGCAGCACAACTCTCACAACAGCAAGCTGCGCCAAGAGAACATGGAGCTGGCCGAGAAACTCAAGAAGCTCATCGAGCAGTATGAGCTCCGGGAGGAGCACACAGATAAGGTGTTCAAACACAAAGAGCTTCAACAGCAGCTGATGGACGCTAAACTCCAGCGGACGGCTGAGCTGATGCGAAAGGTGGAGGAGAAACAGCAGAGGGAAAGAGAGTTTCTCTTAAAAAATGCAACAGAGTCGAGACACAAATGTGAGCTGATGAAGGAGCAGGAGCATCAGCTAAAGCAGCAGCTCACTTTGTACATGGACAAGTTTGAGGAGTTTCAGACGACTCTCGCTAAGAGCAACGAGGTCTTCACCACCTTCAGACAGGAGATGGAGAAAATGACAAAGAAGATCAAGAAGCTTGAAAAGGAGACTACGTTATGGAGGACCAAATGGGAGACCAACAACCAGACTCTACTGCAAATGGCAGAAGAGAAAACAGTGCGAGACAAAAATTACAAGGCCCTCCAAGGTAAACTGGATCGTCTGGAGAAGCTCTGCAGGGCCCTGCAGCGAGAGCGCAACGACCTAAACCAGAAACTCCGAGTACTTCAGGGCCCTGCAAAAGATCCTGAGGAAGAGGGTACTGGACCTCCAGACCCCCAGCCGGAGGAGCTGTCTAACCCAGAGCTGGAAAGAGAGGTGGAGGGAGAGGTGGAGAGAGAAGTAGAGGGAGAGATGGAGGCTTTGGTGCCTGAAACAGAGAAAGTCGGTCTTCAGCCTGACGATTCGAGCAGCACATCATCCACACAACTTATTGACGACTGAGCCTGGCCTTCTGGTGGCCTTTCTTTTTTTGTGGAGGTATATATTTTTGTCTAACAATTATTATCATAAAGTTTGTGAGGAAAAAGCAGGACATTAGTGAAGACGCTAACTGCTCTATACGTTGATAATCCGCTTTGTGGCGAGCACTTTTTACTCCCTATTTTCTATCACATTGTATTTTCGTAGGAAACGGTCATGTGGTCCAAGGCGGCCGCCATGCAGCTTTGTTTCGtatgtttttcgttttttttcttcttccccgATTCTGTTCTCGGCTTTTTCCTGCTCAGCTTGTGCTATGgttgcacatttttttttgtttggtttagttTGTTTCTCTTTAATAAAATGTAGCTCTTCGCTCTGACCTCTAGAATCTGAATAAATCATTTtggttgcatatatatatatatatatatatatatatatatacatatatatatatatatatatatatatatatatatatatatatatatatatatacatatatatatgcattttattttgaaataagcgTACATGGTCAACAAGCTCTAGATGAGCAGATAACCTTGAGACTTGAGTAACAGGGCATTAATAACAGTAGAAACTGAGGTTAACACACACTCATCTACTCATTGGCACTTTGAATCTGATCCGACACGGGTCTGTAGTAAGTTTGGTTTCTGTGGATTTAATTGAACTGGACTTTATAGGAAGATTCACATCTTGTAAATTAGAGAGTGGTCAAGACTCCTCACCGCTTGCGACTGGTTTTCATATGGGAATCTGAATAAGGGCTAGTTTGACTTTGAAAAAGGCTGCTACATCTCCAACAATTATGTGAAATATTAGAACAGGGCCAAATACTtgcgtcagttttttttttcttctcatgtTTAAGAACTTTCTATGTGAGGGAGTACATTTTTGTACCATGAAAAGTGCACATGTAAAGGATGGTAAAATTCTACTTGGCTTTGTATTCATTGAAATTTAGTTAAACTTTGCATTCCTAACAGACGTGATAGTTGCTTTTCTTGAATCGGGGATTTTGAACTAGCTGGATTCATAGTTTAATTTGACCAAACCATGGAATCAATCAGCATTTTCTCCccgaaatatatttttgtttttcattcattcatttctcaaAAACTTTCCTTCTGATTTTTAGAAAAATGGCAGTTATTTTGCTAAAAGGATGAGATTTAACTAAGAATCTCCCTTTTGTCTGGTTTTATTTCATTAATCCTGATGATAGCTATTGTTTGAATTCACCTTCTTTTTCTGTCATCTGCAATATTTAAAATGGTTCAATTATAAAAATCATGGGAAAAATATAGTCAGTCTAAGACAATATATACttgcaaaagtaaaaaaagttttgttttatatatatatatataaaatgaatgtaaatctaCAAAAATGGCAAACCAAAAATTAATtcttcagaaataaaaataaattttgctaacaaaaaataaataaataaactgcaaaaggGAAAggaagttttgagaaataaaaatgaaatttgctaacaaaaaaaaaaactagttaaaAATCAAGGGAACTTGAACGTTTgctttataatttaaattttttattaagcaaaattttttgtttttttcactgcttgatttttatttgcagttcttttttttgttagcaaaattttattttatttatcaacttAATTTCCCTTTTGcagtcttttatttttgttatcaaaatatttttttttttataatttaaataaatttttgctTTGCGAATTTTggaaatttgcatttatttattttttgctcaatacttaattttttgtttgcaaaactctCTTTTATTTCGTAAATTAATATGGCCCTAGGTTGACTCCATAATAAACCAACCAATCTGACagtccaaacctgtttgactgaCTTTCTTCacagaaaaaaagagatttttcaacacattttctttttatgtCATGTTTGGAGTAATATGAGggattttacttttgttttatccTTTCGGTGAATTGGctaatttagatattttttttccaacTCTTAAACTTGACCCAGAATTGACTACAattaatttcacattttaaaaagggGCCTTGATGTATTTGATGCTGAATGTGATTTCTCTCTTTCGTTTCTTGAACACTGTAGTGATCGAGAATAAAGTCTGTAATTCGATGCTCAAATGTTAAAAAGAGCTGCAAAGATTTTCAATGTTGTTAATGTGAATCTGTCTTTAGAGAACTGAACTGATGAATGTAGAAGTTGCCAATCCCATGTCTACAAACGGGCAGCCCTTTAAGAGCTGATCATTCTCACACATGGACACACAGGGTCTAAAAACACTTGCCAGCCTCCTCGGGTCCATTCCAGCATCTGCCACTGTTCATGTCCTGATCTGGCCAGTACATTCCTGAACGCAGAATCCAACAACACATCCTTCAGATAATCTACTTGTAGTGGAGCTGGGCACACTTTTGTAATAATGTAATGGAGGCATTCGAGAAATGCAGAGTGACACCTATTTCTGTGAGAAACTCGTTTGTTCGAAACATGGGCTGAAATGAAAGTCTGAATGTTTAACTTTGCCAAACTAAAACTCAGCAGAACAGTAGATCTTCACCACTTTTCTAAAATCTTGTACCTTGTTTTAATTTTCCATCGTCTAAACTTTCTTCAAATGATGGCTAAGAATGTTGATGTTTATTATAACAGCATATGTTTAATCTTCTCTCCAGAAGTGTGAGCAGTTTTTTTTTGGACACATCTGTAATTGGGGCCATGTTCATTTGAAATGTTTGGTGTTTTGGTACTGTCACTTCGTATCGcgactgttttttgttttgtttttcgctACGCCCCGGTTCGATTCTCAGGTTATGCAAGAAATCTACCTCTTTAGGTAAGACGTACTGTGAAAGATGCTCAAGAGAGCTTTTCTTTCTCCCCCAGCCCAGCCCGTGACCCCTCTGAGATTGTACAACGCTCTTGTAGTTCTGTCTTGCTtttcaataaaacattttgtaGAATTTTC

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0005575 cellular_component cellular_component
GO:0019905 syntaxin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060616-122 Predicted to enable syntaxin binding activity. Predicted to be involved in regulation of cell cycle. Orthologous to human TXLNG (taxilin gamma).

Ensembl:

ensembl_id ENSDART00000104143

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007671 lncRNA downstream 41160 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007672 lncRNA downstream 41160 12739176 ~ 12741136 (-) True XLOC_004023
TCONS_00008772 lncRNA downstream 291017 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00008773 lncRNA downstream 316887 12430155 ~ 12465409 (-) True XLOC_003998
TCONS_00008774 lncRNA downstream 317810 12463700 ~ 12464486 (-) True XLOC_004002
TCONS_00007692 lncRNA upstream 996330 13798453 ~ 13800802 (-) False XLOC_004032
TCONS_00008775 lncRNA upstream 996369 13798492 ~ 13800113 (-) False XLOC_004032
TCONS_00007693 lncRNA upstream 997553 13799676 ~ 13800802 (-) True XLOC_004032
TCONS_00008776 lncRNA upstream 1345540 14147663 ~ 14148426 (-) True XLOC_004034
TCONS_00008777 lncRNA upstream 1506774 14308897 ~ 14311083 (-) False XLOC_004035
TCONS_00007669 mRNA downstream 38214 12732247 ~ 12744082 (-) False XLOC_004023
TCONS_00007670 mRNA downstream 38488 12733314 ~ 12743808 (-) False XLOC_004023
TCONS_00007665 mRNA downstream 42764 12703523 ~ 12739532 (-) True XLOC_004020
TCONS_00007668 mRNA downstream 65292 12715064 ~ 12717004 (-) True XLOC_004022
TCONS_00007666 mRNA downstream 76542 12703887 ~ 12705754 (-) False XLOC_004021
TCONS_00007677 mRNA upstream 180137 12982260 ~ 12998400 (-) True XLOC_004026
TCONS_00007678 mRNA upstream 292056 13094179 ~ 13107106 (-) False XLOC_004027
TCONS_00007679 mRNA upstream 292112 13094235 ~ 13126969 (-) False XLOC_004027
TCONS_00007680 mRNA upstream 292695 13094818 ~ 13127052 (-) False XLOC_004027
TCONS_00007682 mRNA upstream 292695 13094818 ~ 13152524 (-) False XLOC_004027
TCONS_00007673 other downstream 26021 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007664 other downstream 90605 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 160529 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 191000 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007648 other downstream 269034 12512966 ~ 12513262 (-) True XLOC_004008
TCONS_00007689 other upstream 680548 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007741 other upstream 3215760 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 3218806 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 3256068 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007751 other upstream 3325259 16127382 ~ 16127678 (-) True XLOC_004063

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000305_00404037_00414070.mRNA True 2183 mRNA 0.47 9 CI01000305 403693 ~ 414451 (-)