RNA id: TCONS_00007667


Basic Information

Item Value
RNA id TCONS_00007667
length 525
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_004021
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12703887 ~ 12705754 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAACGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCTGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctgaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctTCGCAAAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-121 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000158937

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008772 lncRNA downstream 213017 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00008773 lncRNA downstream 238887 12430155 ~ 12465409 (-) True XLOC_003998
TCONS_00008774 lncRNA downstream 239810 12463700 ~ 12464486 (-) True XLOC_004002
TCONS_00008771 lncRNA downstream 274187 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00007602 lncRNA downstream 484327 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00007671 lncRNA upstream 28523 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007672 lncRNA upstream 33568 12739176 ~ 12741136 (-) True XLOC_004023
TCONS_00007692 lncRNA upstream 1092845 13798453 ~ 13800802 (-) False XLOC_004032
TCONS_00008775 lncRNA upstream 1092884 13798492 ~ 13800113 (-) False XLOC_004032
TCONS_00007693 lncRNA upstream 1094068 13799676 ~ 13800802 (-) True XLOC_004032
TCONS_00007662 mRNA downstream 13757 12688642 ~ 12690539 (-) False XLOC_004018
TCONS_00007663 mRNA downstream 13903 12689047 ~ 12690393 (-) True XLOC_004018
TCONS_00007661 mRNA downstream 30659 12672330 ~ 12673637 (-) True XLOC_004017
TCONS_00007659 mRNA downstream 70279 12632395 ~ 12634017 (-) False XLOC_004016
TCONS_00007660 mRNA downstream 70279 12632705 ~ 12634017 (-) True XLOC_004016
TCONS_00007668 mRNA upstream 9456 12715064 ~ 12717004 (-) True XLOC_004022
TCONS_00007669 mRNA upstream 26639 12732247 ~ 12744082 (-) False XLOC_004023
TCONS_00007670 mRNA upstream 27706 12733314 ~ 12743808 (-) False XLOC_004023
TCONS_00007674 mRNA upstream 76688 12782296 ~ 12802123 (-) False XLOC_004025
TCONS_00007675 mRNA upstream 79718 12785326 ~ 12800945 (-) False XLOC_004025
TCONS_00007664 other downstream 12605 12691395 ~ 12691691 (-) True XLOC_004019
TCONS_00007658 other downstream 82529 12621518 ~ 12621767 (-) True XLOC_004015
TCONS_00007656 other downstream 113000 12590999 ~ 12591296 (-) True XLOC_004013
TCONS_00007648 other downstream 191034 12512966 ~ 12513262 (-) True XLOC_004008
TCONS_00007645 other downstream 204034 12499966 ~ 12500262 (-) True XLOC_004006
TCONS_00007673 other upstream 50535 12756143 ~ 12756275 (-) True XLOC_004024
TCONS_00007689 other upstream 777063 13482671 ~ 13482787 (-) True XLOC_004029
TCONS_00007741 other upstream 3312275 16017883 ~ 16019615 (-) False XLOC_004058
TCONS_00007744 other upstream 3315321 16020929 ~ 16021471 (-) True XLOC_004058
TCONS_00007745 other upstream 3352583 16058191 ~ 16058307 (-) True XLOC_004059

Expression Profile

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