RNA id: TCONS_00007625


Basic Information

Item Value
RNA id TCONS_00007625
length 837
RNA type mRNA
GC content 0.54
exon number 7
gene id XLOC_003993
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12377621 ~ 12379541 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCTGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatttggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagTGAGGCCATGACACTGCTTGGGCTTCTTCCACCCAACTATGTCTGCTTTCACTGTGGGATCCCAGGACACCACATTAGGCACTGCCCCTCTAAAGGGggcagcagctctgctTCGCAAAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCCTTCTCCTGCCAGACCAAGCCGCtgtcctcctcttcctcagctgGTGCAGCATCTTCAGTCCAGGACGCCAGAGGGAAACGTTCCCGCTCCCCATCTCCACCAGAGACGCACGGCGACCAGAAGAGACCACGTCACTGA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-121 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000187551

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007602 lncRNA downstream 157750 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00007600 lncRNA downstream 164288 12213149 ~ 12213431 (-) True XLOC_003977
TCONS_00007594 lncRNA downstream 191575 12185854 ~ 12186144 (-) True XLOC_003975
TCONS_00007591 lncRNA downstream 211712 12165723 ~ 12166007 (-) True XLOC_003972
TCONS_00008770 lncRNA downstream 671583 11646506 ~ 11706136 (-) True XLOC_003962
TCONS_00008771 lncRNA upstream 50024 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00008772 lncRNA upstream 50024 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00008773 lncRNA upstream 50796 12430155 ~ 12465409 (-) True XLOC_003998
TCONS_00008774 lncRNA upstream 84341 12463700 ~ 12464486 (-) True XLOC_004002
TCONS_00007671 lncRNA upstream 354772 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007622 mRNA downstream 13597 12362231 ~ 12364122 (-) False XLOC_003992
TCONS_00007623 mRNA downstream 13778 12362329 ~ 12363941 (-) True XLOC_003992
TCONS_00007619 mRNA downstream 27300 12348479 ~ 12350419 (-) False XLOC_003990
TCONS_00007620 mRNA downstream 27482 12348884 ~ 12350237 (-) True XLOC_003990
TCONS_00007617 mRNA downstream 43173 12332626 ~ 12334546 (-) False XLOC_003989
TCONS_00007626 mRNA upstream 13356 12392715 ~ 12394682 (-) False XLOC_003994
TCONS_00007627 mRNA upstream 13454 12392813 ~ 12394500 (-) True XLOC_003994
TCONS_00007629 mRNA upstream 36706 12416065 ~ 12417952 (-) False XLOC_003996
TCONS_00007630 mRNA upstream 37114 12416473 ~ 12417774 (-) True XLOC_003996
TCONS_00007631 mRNA upstream 55942 12435301 ~ 12437234 (-) False XLOC_003999
TCONS_00007621 other downstream 26164 12351259 ~ 12351555 (-) True XLOC_003991
TCONS_00007616 other downstream 53793 12323630 ~ 12323926 (-) True XLOC_003988
TCONS_00007613 other downstream 88051 12289372 ~ 12289668 (-) True XLOC_003985
TCONS_00007611 other downstream 123563 12253860 ~ 12254156 (-) True XLOC_003983
TCONS_00007606 other downstream 144819 12229830 ~ 12232900 (-) False XLOC_003980
TCONS_00007628 other upstream 16159 12395518 ~ 12395814 (-) True XLOC_003995
TCONS_00007634 other upstream 58725 12438084 ~ 12438380 (-) True XLOC_004000
TCONS_00007645 other upstream 120607 12499966 ~ 12500262 (-) True XLOC_004006
TCONS_00007648 other upstream 133607 12512966 ~ 12513262 (-) True XLOC_004008
TCONS_00007656 other upstream 211640 12590999 ~ 12591296 (-) True XLOC_004013

Expression Profile

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