XLOC_003960


Basic Information

Item Value
gene id XLOC_003960
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11594994 ~ 11601880 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008769
caTGTTTTAACTTTATGATATTGATGTTTATGTCACCTGGGGGAAAAATCTATAGTATGGTGAACTATTCatcaaaatattaatgaaatagcTAGCCAACTGTACATTTCATTTAAGTTTCCAGATGAAGAAGAAAAGTCAAATGACAAATAACAGTTTTATATTATCAAGTGTTATAGGTTATAggatgaccccccccccccccctccgattttatataattaaaacaaatttaaacatttatcgtgactgaaatgttttgttttgagaaTGAATCAAATGACTAACACACTATATTGTGAATGTTTACATTCAAGCTTTCCTTTAAAAACAATTGAACTTGTTGACCAGCTTCAAGTCTCATCTTCTTCACGTTCAGTTATTCATAAGCATGATCAcataagctgcttttccactgtGCTGTATAGTACTGCCCAGTTCACTTTGGTTTGGTTTTGCTCAGCTCAGTTTGAATTTCCACTGCAGTTTAGTGCTGCTTAAAGTAGGTGGGGTTATTGATAGTATTGCGCCGCCTCTACTGCTGTGATATCCTGAAAGCTGCCATTTCAGGTGTCTTATTGTTGctgtggtaaaaaaaaagaaagttgaatTGTGCTAACCAACAATAAAGCAATGTCTGCTGCTGCTGAGTAATTAAAGATGCTGTAAAGTGCATTAGTTCAATAACTTTTCTTTGATATTTACATAGTAGTTATGCGGCTTAAGTTAAAACATTTTTCCAGATTTGATATACTCGTTCATAACCAAAGGATTTACCTCTAGAATGAAAGCTCTAGTTTGACCGTATTTGGATATTAATAAGCTCTGCCCTGTTGCTCTATGGCTTATGTCAATACCTGCTCTCTAGAAAGAGTACCACAGTTTTGTTCCAGAGTTGTGTTGTggataaactatataaaaaatgaGGCAGGAATTATTATCAACCCCCTCATAAACAGATGATATTTTTAAGATCATTGGCCTCCTTTCACAATATGAGCTAAGAGATATGACATGAtgcattaaacatttatattcagcAGTTTATATGTGTCTGTTGCTTCATCACAAACATGCACAGCATATTTCTCAATATACACATTACCTAACAAATGAAACAGACTTTATGCTTCTGGGTGGctctgaataaatgtataatccgtatatcctgcattttgcatttaGATGTACTGTTAACAGATAGTTAGCTAAGTAAACTATATAGATAGCGCTTTTCAAGTATGTCTAGATATAAAGAAACTGTATAAACCTTGAAGGCCATTCCACATCTGAACTTATCAGCCCTTCCTGTGGGTACTGTCTCTtttctcctcaattgtaagttgtTTTAGACCGTCTGCCAAATGCCAAatgatgtaaatgtaatgtaaatcaaTGGACCTGAACTCTCAacgcatttctttaaaaaataaataataatctataAGAGTACTGGCGCAGCCATTTAACAGCTATCTCTGTGTTTGTAaattatagaaaacaatgttAAGACGTGGCACAGTGCAGCAGGCTTTAGTCTCCtattttcttttcaaaataagagtcccgcATACATAGTAAATCTGATGTATGCTTAGATAAATTTAAAGATAAGGAAAAGATTCTGATTGTTGCAATCTCACTAGCAAACATTGTGAACAATCAGACACAGCCTGGAGCGTGCATAATAATGATTCTATGTGCAATGCAACAGTTTTGTTCCAATTGGACAAATTTTAACTGGTATTTTGCACTCAAAGGATTTGCTTGAGAACAAgaaaacaatggtgtttgaggcaCATGGTATGTAATTTCCATGAAttgaactcttattattcaggGATGCCTAGGTAAAATCCAGATTTTCATACTATGGcacttttagatatttttaattgGTGTCTTGTTGCAAATCTGAAGATGCTGGTTTTGACTAATCTGTGATCAGCAGTGTATATACATCACATTTTGATGGTGGCGTGCCTGGCTTGGAGCCTCACCTGAGGTTGCACTAATTAAAGTATGAGGTGCTAGGTATGAAACGCAGTAGAAAATCTCCCAAAAGTAAGCTGTACTGAACCGAACTGAGCTGAACATGTTATGTTGTACTTCAG

Function

GO:

id name namespace
GO:0022610 biological adhesion biological_process
GO:0030154 cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0042221 response to chemical biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032502 developmental process biological_process
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008769 True 2114 lncRNA 0.35 2 11594994 11601880

Neighbor

gene id symbol gene type direction distance location
XLOC_003959 krt99 coding downstream 19924 11565996 ~ 11575070 (-)
XLOC_003958 krt15 coding downstream 76525 11515778 ~ 11518469 (-)
XLOC_003957 krt94 coding downstream 123137 11468566 ~ 11471857 (-)
XLOC_003956 krt93 coding downstream 136786 11454545 ~ 11458208 (-)
XLOC_003955 NA coding downstream 143059 11451660 ~ 11451935 (-)
XLOC_003962 CR848705.2 coding upstream 37603 11639483 ~ 11706136 (-)
XLOC_003963 cdc6 coding upstream 180093 11781973 ~ 11792766 (-)
XLOC_003964 wipf2a coding upstream 242243 11844123 ~ 11890001 (-)
XLOC_003965 si:ch211-69b7.6 coding upstream 289700 11891580 ~ 11910225 (-)
XLOC_003966 abcc10 coding upstream 309519 11911399 ~ 11965033 (-)
XLOC_003954 BX324177.9 misc downstream 147509 11447189 ~ 11447485 (-)
XLOC_003953 BX324177.8 misc downstream 149009 11445689 ~ 11445985 (-)
XLOC_003952 BX324177.23 misc downstream 156807 11437891 ~ 11438187 (-)
XLOC_003951 BX324177.16 misc downstream 159251 11435447 ~ 11435743 (-)
XLOC_003950 BX324177.18 misc downstream 167820 11426878 ~ 11427174 (-)
XLOC_003971 BX469912.7 misc upstream 559778 12161658 ~ 12161955 (-)
XLOC_003973 BX469912.11 misc upstream 566122 12168002 ~ 12168298 (-)
XLOC_003974 BX469912.4 misc upstream 567481 12169361 ~ 12169654 (-)
XLOC_003979 BX469912.8 misc upstream 619010 12220890 ~ 12221186 (-)
XLOC_003983 FO904934.1 misc upstream 651980 12253860 ~ 12254156 (-)
XLOC_003946 NA non-coding downstream 190104 11404596 ~ 11404890 (-)
XLOC_003941 NA non-coding downstream 237807 11356893 ~ 11357187 (-)
XLOC_003940 NA non-coding downstream 240726 11353974 ~ 11354268 (-)
XLOC_003939 NA non-coding downstream 251420 11343280 ~ 11343574 (-)
XLOC_003972 NA non-coding upstream 563843 12165723 ~ 12166007 (-)
XLOC_003975 NA non-coding upstream 583974 12185854 ~ 12186144 (-)
XLOC_003977 NA non-coding upstream 611269 12213149 ~ 12213431 (-)
XLOC_003997 NA non-coding upstream 827503 12429383 ~ 12491279 (-)

Expression


Co-expression Network