XLOC_003956 (krt93)


Basic Information

Item Value
gene id XLOC_003956
gene name krt93
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11454545 ~ 11458208 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007565
AACTCTAACGGTTTCCTGCAGTATCCTCTCTGGGTTCATCTCATCTCCGTATCCATCCACTATGTCACTCTCTGTTCGCTCAACAACAACCAAAGGTCCCAAGACCGTGACCTCAAAATCTATAGTCACTAAGAGTCGTGGAGGTTCGACATCCTTTCCACATAAAGCCTACAGTGTGTATGGAGGTGGTTTTGGAGGAAGCACTCGCATCTCCTCTACTAGAATTGGAGGCGGTGGAGGATACGGATTTGCTGGAGGACACTGTGGAGGATATGGAGGAGGTTACGGTGGAGGATATAGTGGACCACTTTCCATTTGCGTAATGCCTTCTAGCGGCCTTGGGGATTTCCAGCTGAATGAGAAGGCCACTATGCAGAACCTGAATGATCGTCTGGCGTCCTACCTGGATAAGGTGCGCTCCCTAGAGGCTGCCAATGCCACTCTGGAGAGGCAGATCCGCGAGTACTATGAGAAGAAGGGGCCAGTCGCACAGAGGGACTACAGCCAATACTGGAACACCATCAAGGACCTAAAAGACAAGattaAAAATGCAACCACGCACAACGCCAACATTCTCCTGCAGATCGACAACTCTAAACTGGCTGCTGATGACTTCAGGCTGAAattcgAGCATGAGGTTGTGATGCGCCAGTGTGTAGAATCTGACATCGCTAACCTGCGCCGCTTGCTGGACCAGACGAACCTGGCAAAGAATGACCTACAGATGCAGATCAAGGGTCTGGAGGAAGAGCTGGTATTTTTGAAGAAGAACCACCAAGAGGAGATGGCTGCACTGAGGTGTCAGCTGACAGGCACGGTGAACGTCGAGGTCGATGCTGCTCCTCAACAAGATCTGAACAAGGTTCTGGAGGAGATTCGTACTCATTACGAGAACATTATTCAGAAACACCGCAGGGAACAGGAAGCCTGGTTTAAAGACAAGACGGCACCATTGAACAAAGAGGTGGCTCACAGTACAGAGACCATCCAAACATCCAGGTCACAGATCACAGAGCTGCGAAACACATTGCAGAGTTTGGAGATCGAGCTACAGTCTCAGCTCAGCATGAAAGCAGCACTGGAGCACTCACTGGCAGAAACAGAAGCTAGGTACAGTGCTATGCTAGCAGGCTTCCAAAATCAAATCAACAACCTGGAAGCTGAGTTGGCTCAGTTGAGAGCTAGCATTGAACAGCAGGGCCGAGACTACGCCTTGTTGCTGGACATCAAGACTCGTCTGGAGCAGGAGATCGCCACCTACAGGAACCTTCTGGAAAACCAGGACATTAGGACTCAAATTCCAGTGTCCATCTCTGTCTCAGGTGGCTCTCAGTCCGTCTCATCAGGTGGATCTCACTCTGTTTCCTCTGGAGGTTCCCACACTATCTCCACTGGTGGACCAACAATCCAAATAAAGCAAACAACCACCACTTCACACCGTACTTATTAAAGACAGAATGTGCTTTGAGACAGTAtttaaacacatgcacacataagTGTTTTAGATACACATTTATAACCCAAGTAACAAGGAACCGCAGTATTTTGAACACATTAAAAACACTTACtgctgtgtttaaaaaaaaaaactgtttctgaaaataaaagtaCTGTCTTTAAAA

Function

symbol description
krt93 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in jaw row breeding tubercle. Human ortholog(s) of this gene implicated in autosomal recessive woolly hair 3. Orthologous to several human genes including KRT19 (keratin 19) and KRT20 (keratin 20).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-4592 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in jaw row breeding tubercle. Human ortholog(s) of this gene implicated in autosomal recessive woolly hair 3. Orthologous to several human genes including KRT19 (keratin 19) and KRT20 (keratin 20).

Ensembl:

ensembl_id ENSDARG00000044976

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007565 True 1622 mRNA 0.48 8 11454545 11458208

Neighbor

gene id symbol gene type direction distance location
XLOC_003955 NA coding downstream 2610 11451660 ~ 11451935 (-)
XLOC_003946 NA coding downstream 49655 11404596 ~ 11404890 (-)
XLOC_003941 NA coding downstream 97358 11356893 ~ 11357187 (-)
XLOC_003940 NA coding downstream 100277 11353974 ~ 11354268 (-)
XLOC_003939 NA coding downstream 110971 11343280 ~ 11343574 (-)
XLOC_003957 krt94 coding upstream 10358 11468566 ~ 11471857 (-)
XLOC_003958 krt15 coding upstream 57570 11515778 ~ 11518469 (-)
XLOC_003959 krt99 coding upstream 107788 11565996 ~ 11575070 (-)
XLOC_003960 NA coding upstream 136786 11594994 ~ 11601880 (-)
XLOC_003961 si:dkey-28e7.3 coding upstream 137765 11595973 ~ 11625630 (-)
XLOC_003954 BX324177.9 misc downstream 7060 11447189 ~ 11447485 (-)
XLOC_003953 BX324177.8 misc downstream 8560 11445689 ~ 11445985 (-)
XLOC_003952 BX324177.23 misc downstream 16358 11437891 ~ 11438187 (-)
XLOC_003951 BX324177.16 misc downstream 18802 11435447 ~ 11435743 (-)
XLOC_003950 BX324177.18 misc downstream 27371 11426878 ~ 11427174 (-)
XLOC_003971 BX469912.7 misc upstream 703450 12161658 ~ 12161955 (-)
XLOC_003973 BX469912.11 misc upstream 709794 12168002 ~ 12168298 (-)
XLOC_003974 BX469912.4 misc upstream 711153 12169361 ~ 12169654 (-)
XLOC_003979 BX469912.8 misc upstream 762682 12220890 ~ 12221186 (-)
XLOC_003983 FO904934.1 misc upstream 795652 12253860 ~ 12254156 (-)
XLOC_003962 CR848705.2 non-coding upstream 181275 11639483 ~ 11706136 (-)
XLOC_003972 NA non-coding upstream 707515 12165723 ~ 12166007 (-)
XLOC_003975 NA non-coding upstream 727646 12185854 ~ 12186144 (-)
XLOC_003977 NA non-coding upstream 754941 12213149 ~ 12213431 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000305_00342924_00346089 NA coding CI01000305 null 342816 ~ 346229 (+)