XLOC_003959 (krt99)


Basic Information

Item Value
gene id XLOC_003959
gene name krt99
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11565996 ~ 11575070 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007568
AGATGCTTGGCGTCCACACTGAGAAACATCCAGTTTCTACAGACCTTCTCGCTCAGCCATGACGATGCATCGCAGCAGTAAAACTCTTCAGAAGTTCAGCTCTCAGAGTGTGTTCGCGTCGGCTGGAGGTTCCTCTGGTGGACTGGTCATGAACGGTTTTGGGAGCTCAGGCAGCTCTTTGTCTTTTGGTGGGCAAAACTTCAGTAGCTCTTCAGGCTTCGGTGCTCGCATCTCCAGATCGGTGTCCACTTCATCTTTGGATATGACTGGGAATGAGGCCATTCTGTGTGCCAGTGAGAAGCAAACAATGCAGAACCTCAATGACCGTCTCGCATCTTACCTGGAGAGGGTGCGCTCTTTAGAGCAGGAGAACAAGAAGCTTGAACTCCAAATTAAGGAGTTTTATGACAGCAAGAGCCCCATGCAGAGCAAAGACATGAGTGCTTACTTCAAAACCATTTCAGAGCTCCGTGCACAGATTCATGGACGCTTTTTGGAAAACGCAGAGCTCCATCTGAAACTGGACAACATCAGGCTTGCAGCTGAAGACTTCCATATTAAATATGAAAGTGAATTGAACATGCGTACGATTGTGGAAGCAGATTCTGCTCGACTTCGAGGAGTTCTGAGTGAGATCAAACTGTCCATCGGAGACCTGCAGAGCCAGTTTACTTTATTGAAAGAGGAACAGGTGTACCTTAAGAAGAACCACGAAGAGGATCTGCATTTGCTGCGAGAACAGCACAGCGGCTCTGTCAATGTGGAGATGGACTGCGCAGATCAATCGCATCTTGACGAGGAGCTGCGGGAGATGAGAGCTCAGTATGAGAAGCTTATTGAGAAAAACCGCAGGGAGGCTGAAAGATGGTTCCACAGCAAGgcAGAAGTGCTGCAGACTCAGGTGGACACCAGCTCTACTGAAATCAAGACATCTCAGACTCAACTCACTGATTTAAGGAGAACTTTCCAGAGCCTGGAGATAGAACTACAGGGGGTTCTCACTATGAAACAAAACCTGGAGAATACTTTGGCCGATGTGGGCATACGTTATACAACCCAGCTGAGTCAGCTCCAATTACGCATAGACCACCTTCAGGAGGAGCTACAGAAACTTAATACCAACATCCGACAACAGGCTTCTGAGTACCAGATACTCCTGGACATCAAGATGAGGCTGGAGATGGAGATCGCTGAATATAGGAGGCTGCTGGAGGGAGAAACTCAAACGACCGTCATAAGCACATCTTCTTCCTCCATGACAAAAACTGTGACAGAAACAGAAACCGTGAGCAAAACAGTGGAGATAATAGAAGAGGAAGAGTATAACCCTCATGTGCAGCGCAGAGTGAAGGTCATTGTGGAGGAGCTGGTGGATGGTAAAGTCGTTTCTTCTTCTGTGGAGGAGAAGGTCCATGAAATTAGCTAAGAACGaaagaacaacaaaaaacaatccTACATGTAAACTATAATGACCAATAATAATGgtaattttaaaaacactataagaTTAAATATGCTTTTGGAAATTCtgaggaaaaaaatgttttttttttcttacagtaaaataaatgtttcatgaATAAAATGTGAGCGTGAtaaattttacattcatattgTATCATGCAGCCAACTTTAAGAGTTTCTTGACTAGCTTTATTTTATGACTCtggtctttgttttggtcttacTGTGTTTTGTATACTCAATGTGTAATCACTCAATGTcgatgtattttaattaaactttgtATGAGAGAAATTTCCAACA
>TCONS_00007569
ACTCCAAATTAAGGAGTTTTATGACAGCAAGAGCCCCATGCAGAGCAAAGACATGAGTGCTTACTTCAAAACCATTTCAGAGCTCCGTGCACAGATTCATGGACGCTTTTTGGAAAACGCAGAGCTCCATCTGAAACTGGACAACATCAGGCTTGCAGCTGAAGACTTCCATATTAAATATGAAAGTGAATTGAACATGCGTACGATTGTGGAAGCAGATTCTGCTCGACTTCGAGGAGTTCTGAGTGAGATCAAACTGTCCATCGGAGACCTGCAGAGCCAGTTTACTTTATTGAAAGAGGAACAGGTGTACCTTAAGAAGAACCACGAAGAGGTTACCTTACCATTTCACCCTAACTCTTTTGTCTAGACTACAGgaactggctttgaaaCCTGTAGTCTAGTACATTTACAACCTTTACATCATGATAAATGATCTTTGAACCTCTTCTTTTCCCCAGGATCTGCATTTGCTGCGAGAACAGCACAGCGGCTCTGTCAATGTGGAGATGGACTGCGCAGATCAATCGCATCTTGACGAGGAGCTGCGGGAGATGAGAGCTCAGTATGAGAAGCTTATTGAGAAAAACCGCAGGGAGGCTGAAAGATGGTTCCACAGCAAGgcAGAAGTGCTGCAGACTCAGGTGGACACCAGCTCTACTGAAATCAAGACATCTCAGACTCAACTCACTGATTTAAGGAGAACTTTCCAGAGCCTGGAGATAGAACTACAGGGGGTTCTCACTATGAAACAAAACCTGGAGAATACTTTGGCCGATGTGGGCATACGTTATACAACCCAGCTGAGTCAGCTCCAATTACGCATAGACCACCTTCAGGAGGAGCTACAGAAACTTAATACCAACATCCGACAACAGGCTTCTGAGTACCAGATACTCCTGGACATCAAGATGAGGCTGGAGATGGAGATCGCTGAATATAGGAGGCTGCTGGAGGGAGAAACTCAAACGACCGTCATAAGCACATCTTCTTCCTCCATGACAAAAACTGTGACAGAAACAGAAACCGTGAGCAAAACAGTGGAGATAATAGAAGAGGAAGAGTATAACCCTCATGTGCAGCGCAGAGTGAAGGTCATTGTGGAGGAGCTGGTGGATGGTAAAGTCGTTTCTTCTTCTGTGGAGGAGAAGGTCC

Function

symbol description
krt99 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in several structures, including EVL; ectoderm; margin; pectoral fin bud; and peripheral olfactory organ.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-50 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in several structures, including EVL; ectoderm; margin; pectoral fin bud; and peripheral olfactory organ.

Ensembl:

ensembl_id ENSDARG00000019365

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007568 False 1767 mRNA 0.44 9 11565996 11575070
TCONS_00007569 True 1155 processed_transcript 0.46 8 11566351 11573760

Neighbor

gene id symbol gene type direction distance location
XLOC_003958 krt15 coding downstream 47527 11515778 ~ 11518469 (-)
XLOC_003957 krt94 coding downstream 94139 11468566 ~ 11471857 (-)
XLOC_003956 krt93 coding downstream 107788 11454545 ~ 11458208 (-)
XLOC_003955 NA coding downstream 114061 11451660 ~ 11451935 (-)
XLOC_003946 NA coding downstream 161106 11404596 ~ 11404890 (-)
XLOC_003960 NA coding upstream 19924 11594994 ~ 11601880 (-)
XLOC_003961 si:dkey-28e7.3 coding upstream 20903 11595973 ~ 11625630 (-)
XLOC_003962 CR848705.2 coding upstream 64413 11639483 ~ 11706136 (-)
XLOC_003963 cdc6 coding upstream 206903 11781973 ~ 11792766 (-)
XLOC_003964 wipf2a coding upstream 269053 11844123 ~ 11890001 (-)
XLOC_003954 BX324177.9 misc downstream 118511 11447189 ~ 11447485 (-)
XLOC_003953 BX324177.8 misc downstream 120011 11445689 ~ 11445985 (-)
XLOC_003952 BX324177.23 misc downstream 127809 11437891 ~ 11438187 (-)
XLOC_003951 BX324177.16 misc downstream 130253 11435447 ~ 11435743 (-)
XLOC_003950 BX324177.18 misc downstream 138822 11426878 ~ 11427174 (-)
XLOC_003971 BX469912.7 misc upstream 586588 12161658 ~ 12161955 (-)
XLOC_003973 BX469912.11 misc upstream 592932 12168002 ~ 12168298 (-)
XLOC_003974 BX469912.4 misc upstream 594291 12169361 ~ 12169654 (-)
XLOC_003979 BX469912.8 misc upstream 645820 12220890 ~ 12221186 (-)
XLOC_003983 FO904934.1 misc upstream 678790 12253860 ~ 12254156 (-)
XLOC_003941 NA non-coding downstream 208809 11356893 ~ 11357187 (-)
XLOC_003940 NA non-coding downstream 211728 11353974 ~ 11354268 (-)
XLOC_003939 NA non-coding downstream 222422 11343280 ~ 11343574 (-)
XLOC_003972 NA non-coding upstream 590653 12165723 ~ 12166007 (-)
XLOC_003975 NA non-coding upstream 610784 12185854 ~ 12186144 (-)
XLOC_003977 NA non-coding upstream 638079 12213149 ~ 12213431 (-)

Expression


Co-expression Network