XLOC_003941


Basic Information

Item Value
gene id XLOC_003941
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11356893 ~ 11357187 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008458
GCCGGGTTCAGTGGCGCGCGCCTGTAATCCAAGTTACTGGGAGGCTGAGGCTGCGGATCGCTTGAGTTCAGGGCTTCTGGACTGCAGTGGACTATGTTGATCGGGTGTCCACGCTAAGTTCGGTATCGATATGGTGTTGCTGGGGGAGCTTGGGACCACCAGGTCGTTTAAGGAGGGGTGAACCGACCCAGGCCGGAGACGGAGCAGGTCAAAGCCCCCGTGCTGATCAGTAGTGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAgcgacacagagagacgcagact

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008458 True 295 lncRNA 0.59 1 11356893 11357187

Neighbor

gene id symbol gene type direction distance location
XLOC_003940 NA coding downstream 2625 11353974 ~ 11354268 (-)
XLOC_003939 NA coding downstream 13319 11343280 ~ 11343574 (-)
XLOC_003937 C11H6orf120 coding downstream 19907 11332652 ~ 11336986 (-)
XLOC_003936 mrpl4 coding downstream 25747 11319141 ~ 11331146 (-)
XLOC_003935 col9a1a coding downstream 55536 11274940 ~ 11301357 (-)
XLOC_003946 NA coding upstream 47409 11404596 ~ 11404890 (-)
XLOC_003955 NA coding upstream 94473 11451660 ~ 11451935 (-)
XLOC_003956 krt93 coding upstream 97358 11454545 ~ 11458208 (-)
XLOC_003957 krt94 coding upstream 111379 11468566 ~ 11471857 (-)
XLOC_003958 krt15 coding upstream 158591 11515778 ~ 11518469 (-)
XLOC_003938 BX324177.10 misc downstream 17793 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 10407 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 13268 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 23717 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 26646 11383833 ~ 11384130 (-)
XLOC_003947 BX324177.21 misc upstream 55415 11412602 ~ 11412898 (-)
XLOC_003933 CR678435.1 non-coding downstream 496787 10859024 ~ 10860106 (-)
XLOC_003927 NA non-coding downstream 1028366 10305130 ~ 10328527 (-)
XLOC_003925 NA non-coding downstream 1948888 9407671 ~ 9408005 (-)
XLOC_003960 NA non-coding upstream 237807 11594994 ~ 11601880 (-)
XLOC_003962 CR848705.2 non-coding upstream 282296 11639483 ~ 11706136 (-)
XLOC_003972 NA non-coding upstream 808536 12165723 ~ 12166007 (-)

Expression


Co-expression Network