XLOC_003936 (mrpl4)


Basic Information

Item Value
gene id XLOC_003936
gene name mrpl4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11319141 ~ 11331146 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007545
ACGCTATCACGACCTTCCTGACAAGAAGGAAAGCAAATAATGTAAGAACTGATATTATAACGGCAGAGctcttatttatttctatttgccAGCATCATGTTTCGTGCCACGTTGGCGATATGTGGAAGAACAGTCGTTAAAAGGCAGTTCATCTCATCTGTATCTGGAGAAAGCGCACTTCCACCAAATCTCAGACTGCCACCAAATCTCATTGGAGTCGCAGCAGAAAAGCGGCCGCCTCCCTCCGGCTCAGATCTTCCAGTTGTGCGCAGATGTGAGGCTGATGTCCCAGCTCACTTGACACCAGCGCAGACCTGGCTGGAATCGTTGGGAAGTCGTGACAGTGACCAGCTTGGTGTGGTTGACCTGCACCCTGACGTCTTCTCCGTGCCAATCAGACTGGATATTCTCCATGCTGTAGAGGTCTGGCAACGGAACTTCAAACGAATTAGTTATGCAAATGTCAAGACAAGAGCAGAAGTCCGAGGTGGAGGCAGGAAACCGTGGCAACAGAAAAGAACTGGCCGAGCACGACATGGAAGCATTCGTTCTCCGCTCTGGAGAGGAGGAGGAATAATTCATGGTCCACGAGGACCAACCAGTTATTATTACATGCTGCCTATGAAGGTGCGAGTGCAGGGGCTGAAAATCGCCCTGTCCGCCAAACTGGCTCAGGATTACCTTCATATTGTGGACTCGTTGGAGATTCCCACTCCAGACCCCCAGTACCTCCAGGACCTGGTCAAACACAGACAGTGGGGGGATTCGGTCCTCATTGTTGACGTAGGGGAAGAATTTCCACAAAACATTCTTAAGGCGACCGAAGATCTAAAAACAGTGAACATCATTCCAGCTCTAGGTCTCAACGTCCACAGTTTGTTGAAACACGAGAGTCTGGTTCTCACTCTGGAGGCTGTCAAATTCCTTGAAAAGAAGCTTCTCTGGCATGATGTGCGTTACACTCCCCTGTACCCCTTCAAACTCCCATACAGCGACCTGCCATGAACAGCATGGACTTCAGtggattaaaatgtttatttcataaAAACAA
>TCONS_00007546
acacacacacacacacacacacacacacacacacacacacacacacacacacaaaacgcgGCTTACGTCATATGTGGGCGACGGAAGTGTGCGCACGCTATCACGACCTTCCTGACAAGAAGGAAAGCAAATAATGTAAGAACTGATATTATAACGGCAGAGctcttatttatttctatttgccAGCATCATGTTTCGTGCCACGTTGGCGATATGTGGAAGAACAGTCGTTAAAAGGTTCATCTCATCTGTATCTGGAGAAAGCGCACTTCCACCAAATCTCAGACTGCCACCAAATCTCATTGGAGTCGCAGCAGAAAAGCGGCCGCCTCCCTCCGGCTCAGATCTTCCAGTTGTGCGCAGATGTGAGGCTGATGTCCCAGCTCACTTGACACCAGCGCAGACCTGGCTGGAATCGTTGGGAAGTCGTGACAGTGACCAGCTTGGTGTGGTTGACCTGCACCCTGACGTCTTCTCCGTGCCAATCAGACTGGATATTCTCCATGCTGTAGAGGTCTGGCAACGGAACTTCAAACGAATTAGTTATGCAAATGTCAAGACAAGAGCAGAAGTCCGAGGTGGAGGCAGGAAACCGTGGCAACAGAAAAGAACTGGCCGAGCACGACATGGAAGCATTCGTTCTCCGCTCTGGAGAGGAGGAGGAATAATTCATGGTCCACGAGGACCAACCAGTTATTATTACATGCTGCCTATGAAGGTGCGAGTGCAGGGGCTGAAAATCGCCCTGTCCGCCAAACTGGCTCAGGATTACCTTCATATTGTGGACTCGTTGGAGATTCCCACTCCAGACCCCCAGTACCTCCAGGACCTGGTCAAACACAGACAGTGGGGGGATTCGGTCCTCATTGTTGACGTAGGGGAAGAATTTCCACAAAACATTCTTAAGGCGACCGAAGATCTAAAAACAGTGAACATCATTCCAGCTCTAGGTCTCAACGTCCACAGTTTGTTGAAACACGAGAGTCTGGTTCTCACTCTGGAGGCTGTCAAATTCCTTGAAAAGAAGCTTCTCTGGCATGATGTGCGTTACACTCCCCTGTACCCCTTCAAACTCCCATACAGCGACCTGCCATGAACAGCATGGACTTCAGtggattaaaatgtttatttcataaAAACAA
>TCONS_00007547
AACTTGGCATTTAATCTCTTAACAAATGCTCTTCCTCATACAGGAGGAATAATTCATGGTCCACGAGGACCAACCAGTTATTATTACATGCTGCCTATGAAGGTGCGAGTGCAGGGGCTGAAAATCGCCCTGTCCGCCAAACTGGCTCAGGATTACCTTCATATTGTGGACTCGTTGGAGATTCCCACTCCAGACCCCCAGTACCTCCAGGACCTGGTCAAACACAGACAGTGGGGGGATTCGGTCCTCATTGTTGACGTAGGGGAAGAATTTCCACAAAACATTCTTAAGGCGACCGAAGATCTAAAAACAGTGAACATCATTCCAGCTCTAGGTCTCAACGTCCACAGTTTGTTGAAACACGAGAGTCTGGTTCTCACTCTGGAGGCTGTCAAATTCCTTGAAAAGAAGCTTCTCTGGCATGATGTGCGTTACACTCCCCTGTACCCCTTCAAACTCCCATACAGCGACCTGCCA
>TCONS_00007548
GCTATCACGACCTTCCTGACAAGAAGGAAAGCAAATAATGTAAGAACTGATATTATAACGGCAGAGctcttatttatttctatttgccAGCATCATGTTTCGTGCCACGTTGGCGATATGTGGAAGAACAGTCGTTAAAAGGTTCATCTCATCTGTATCTGGAGAAAGCGCACTTCCACCAAATCTCAGACTGCCACCAAATCTCATTGGAGTCGCAGCAGAAAGTGTGTGAACTGTTGTTTCAGAGCGGCCGCCTCCCTCCGGCTCAGATCTTCCAGTTGTGCGCAGATGTGAGGCTGATGTCCCAGCTCACTTGACACCAGCGCAGACCTGGCTGGAATCGTTGGGAAGTCGTGACAGTGACCAGCTTGGTGTGGTTGACCTGCACCCTGACGTCTTCTCCGTGCCAATCAGACTGGATATTCTCCATGCTGTAGAGGTCTGGCAACGGAACTTCAAACGAATTAGTTATGCAAATGTCAAGACAAGAGCAGAAGTCCGAGGTGGAGGCAGGAAACCGTGGCAACAGAAAAGAACTGGCCGAGCACGACATGGAAGCATTCGTTCTCCGCTCTGGAGAGGAGGAGGAATAATTCATGGTCCACGAGGACCAACCAGTTATTATTACATGCTGCCTATG
>TCONS_00007549
cgcgGCTTACGTCATATGTGGGCGACGGAAGTGTGCGCACGCTATCACGACCTTCCTGACAAGAAGGAAAGCAAATAATCAGTTCATCTCATCTGTATCTGGAGAAAGCGCACTTCCACCAAATCTCAGACTGCCACCAAATCTCATTGGA

Function

symbol description
mrpl4 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL4 (mitochondrial ribosomal protein L4).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-050522-388 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL4 (mitochondrial ribosomal protein L4).

Ensembl:

ensembl_id ENSDARG00000058824

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007545 False 1051 mRNA 0.49 9 11319141 11331052
TCONS_00007546 False 1142 mRNA 0.49 9 11319141 11331146
TCONS_00007547 False 477 lncRNA 0.48 4 11319190 11325620
TCONS_00007548 False 640 nonsense_mediated_decay 0.49 6 11325522 11331050
TCONS_00007549 True 151 processed_transcript 0.49 2 11330725 11331090

Neighbor

gene id symbol gene type direction distance location
XLOC_003935 col9a1a coding downstream 17784 11274940 ~ 11301357 (-)
XLOC_003934 lgsn coding downstream 52259 11263451 ~ 11266882 (-)
XLOC_003933 CR678435.1 coding downstream 459035 10859024 ~ 10860106 (-)
XLOC_003932 psmd14 coding downstream 468205 10832560 ~ 10850936 (-)
XLOC_003931 tbr1a coding downstream 490602 10812949 ~ 10828539 (-)
XLOC_003937 C11H6orf120 coding upstream 1506 11332652 ~ 11336986 (-)
XLOC_003939 NA coding upstream 12134 11343280 ~ 11343574 (-)
XLOC_003940 NA coding upstream 22828 11353974 ~ 11354268 (-)
XLOC_003941 NA coding upstream 25747 11356893 ~ 11357187 (-)
XLOC_003946 NA coding upstream 73450 11404596 ~ 11404890 (-)
XLOC_003938 BX324177.10 misc upstream 7658 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 36448 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 39309 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 49758 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 52687 11383833 ~ 11384130 (-)
XLOC_003927 NA non-coding downstream 990614 10305130 ~ 10328527 (-)
XLOC_003925 NA non-coding downstream 1911136 9407671 ~ 9408005 (-)
XLOC_003924 CR788237.1 non-coding downstream 2025730 9292281 ~ 9293411 (-)
XLOC_003923 CR788237.2 non-coding downstream 2032665 9285823 ~ 9286476 (-)
XLOC_003955 NA non-coding upstream 120514 11451660 ~ 11451935 (-)

Expression


Co-expression Network