RNA id: TCONS_00007578


Basic Information

Item Value
RNA id TCONS_00007578
length 588
RNA type nonsense_mediated_decay
GC content 0.45
exon number 4
gene id XLOC_003964
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11844123 ~ 11890001 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCAATGGACACACGTCTTCCGCCTCAAGATCCTTTGCTGATGATTTTGAGTCCAAGTATGATTTCCACCCAATAGAGGATTTTCCTCCACCTGAAGAATACAGAAACTTCCCGAAGAGCTATCCCAGCCACAACCACAACAACAGAGTGCGAGGtgctcctccagctcctccagttGGAGGAAGATGAAGAGAATTCAGTGAAGAGGAGGACCAAAAGAAACGGAAATACGTACACGCCGTATACgCAGGTCCAGCGGGTCTTGGATGTACTGGCACAGCAGGCTGCTTTACCGACTGAGCGGACACCATCTCAACGCTAATCGGTTGTAGCAGTTTGTCTTCTCTGTTCTGGGTCCAGAGAAGTACAAAATCTATATTGCCTGTCATCCTCATGTTTCTCGCTGGCTCATCATCTGTACTGGAACTGGATACTGATGTTGCACTTTGATCGGTATCATACAGCCCAGAGCTGTTGGACTTTCCTGCAATTGTTGATATTGTTCCTGtgttgaacaaacaaaaaaacaacatcatgGATTAACAATCTGATAAAGGACTAAATCAAACTTATCATCTTTATATAAT

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121219-6 Predicted to enable actin binding activity. Orthologous to human WIPF2 (WAS/WASL interacting protein family member 2).

Ensembl:

ensembl_id ENSDART00000167684

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008770 lncRNA downstream 139465 11646506 ~ 11706136 (-) True XLOC_003962
TCONS_00007573 lncRNA downstream 139508 11639483 ~ 11706093 (-) False XLOC_003962
TCONS_00007574 lncRNA downstream 139517 11639653 ~ 11706084 (-) False XLOC_003962
TCONS_00008769 lncRNA downstream 243721 11594994 ~ 11601880 (-) True XLOC_003960
TCONS_00007564 lncRNA downstream 393666 11451660 ~ 11451935 (-) True XLOC_003955
TCONS_00007591 lncRNA upstream 294752 12165723 ~ 12166007 (-) True XLOC_003972
TCONS_00007594 lncRNA upstream 314883 12185854 ~ 12186144 (-) True XLOC_003975
TCONS_00007600 lncRNA upstream 342178 12213149 ~ 12213431 (-) True XLOC_003977
TCONS_00007602 lncRNA upstream 347135 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00008771 lncRNA upstream 558412 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00007576 mRNA downstream 52835 11783464 ~ 11792766 (-) True XLOC_003963
TCONS_00007575 mRNA downstream 53883 11781973 ~ 11791718 (-) False XLOC_003963
TCONS_00007571 mRNA downstream 219971 11595973 ~ 11625630 (-) False XLOC_003961
TCONS_00007570 mRNA downstream 219971 11595973 ~ 11625630 (-) False XLOC_003961
TCONS_00007572 mRNA downstream 220232 11597072 ~ 11625369 (-) True XLOC_003961
TCONS_00007581 mRNA upstream 20609 11891580 ~ 11910225 (-) True XLOC_003965
TCONS_00007582 mRNA upstream 40428 11911399 ~ 11961706 (-) False XLOC_003966
TCONS_00007583 mRNA upstream 40609 11911580 ~ 11965033 (-) True XLOC_003966
TCONS_00007584 mRNA upstream 112494 11983465 ~ 12008001 (-) True XLOC_003967
TCONS_00007585 mRNA upstream 138764 12009735 ~ 12051283 (-) False XLOC_003968
TCONS_00007569 other downstream 271841 11566351 ~ 11573760 (-) True XLOC_003959
TCONS_00007563 other downstream 398116 11447189 ~ 11447485 (-) True XLOC_003954
TCONS_00007562 other downstream 399616 11445689 ~ 11445985 (-) True XLOC_003953
TCONS_00007561 other downstream 407414 11437891 ~ 11438187 (-) True XLOC_003952
TCONS_00007560 other downstream 409858 11435447 ~ 11435743 (-) True XLOC_003951
TCONS_00007587 other upstream 225228 12096199 ~ 12104916 (-) False XLOC_003969
TCONS_00007590 other upstream 290687 12161658 ~ 12161955 (-) True XLOC_003971
TCONS_00007592 other upstream 297031 12168002 ~ 12168298 (-) True XLOC_003973
TCONS_00007593 other upstream 298390 12169361 ~ 12169654 (-) True XLOC_003974
TCONS_00007605 other upstream 349919 12220890 ~ 12221186 (-) True XLOC_003979

Expression Profile

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