RNA id: TCONS_00007583


Basic Information

Item Value
RNA id TCONS_00007583
length 4584
RNA type mRNA
GC content 0.50
exon number 23
gene id XLOC_003966
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11911399 ~ 11965033 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcaaagggagaccttgatttgtacagagttagcttaTTCATATCAGAGCTCTGTCACACTGATGTGGACAGTCCATTCCCTGTGTGGCAGAATGGCACCATCAGCCCTTGTGCTAACCAGCTTCTGCTGGGATCTTTGCCCCATGCTGTCTTTGCAGTCATCAGTGCCTGTTATATTAGTGTGCCCAGGCTTATCCATATCGTATCCTCCCTTCCCATTGGCTGGAGCTTAAGGGCTGCATCGACCTTACTCGTATTTCTCTTATTTATTGGAGACTTAGTCCTGGTTTTTGAGCTCCAGGCCCCAGATATATATCTGGACACCTTAGCCGATGGATGCGGCATGTTAGCCTTCCTGGTTCACTTTGGAGCCATTTTGTCCTTACAGAAGTCCATTTACAGAAGGACTCGAGGTCCTGCTTTGCTTCCTGTGGCACTTATTCTCTCCATTCCTAATCTCGCTTTTAACCTGACTGTCTGCACCCAAGAAATCATTCACCACGGAGTCTCACAGCCCCTGCAGGTTATTCGTCTAGCTTTCACAGTAACCAGAGGTGCCCTGGTGTTGGTCTACCTGCTTGGGTACATCTTTCCCTGTTACAGAACACAAAGAGACCTTCTGTCATGTAATGCAGAAGATGAAGCTCCTTTAATTGTTACTTTTGAACCCTTCGAAGAGGTGACTGTTGCTGAGGATGGCAGCAGCTTGCTTTCCAGACTCCTCTATCTGTGGCTCAACCCTTTGCTAAATCGAGGTAAACGTGGAGAGCTGGGGAGACCAAGTGATGTCTTTGAGCTTCCAAGTCGACTGCGCACCAAATCAGTCACCCGCCGGTTCTACCAGTGCTGGGAGAAATGCCTCCATTCACGAAGACCGGATAGACGTCCGAGAGGAAACCTGCAGGACAACTCTTGGAGTGAAGCTCAACCGGAAAGGATTTGCGAAGGTGAAGCGGAACATGAAGTCAAGCTTCTGCAAGTGCTGCACAAGGCCTTTGGTTTACGCTACTACCTGTTGGGAGGGTTGAAGCTAGTAGCTAGCATGTTAGCTTTTGCAGGACCCCTTCTTCTTGGTGGACTGGTGGGTTTCATGGAGACTGAAGGAGCACCACTGAGCAAGGGTGTGTGGTGCGCTGTAGGGCTTTTTGCTAGTACTTTTCTTGCTGCCCTGCTAAAAAACATCTTTGTTTATGAAGTATCAAAGGTTGCCCTGGAAGCTCGGGCTGCTGTGATTTCCACCATCTACTGCAAAGCCTTAAAAGTCAATGCGCCTTCTCTGGCTCGCTTCAACATGGGTGAGGTAGTCAACTTTATGAGCACGGACACTGACCGCGTGGTCAATTTCTTCAACAGCTTCCATGAGGTGTGGAGTCTTCCCTTCCAGTTTGTTCTTGCACTTTACCTGCTGTACCTGCAGGTGGGCGTGGCCTTTTTAGGTGGAGTGGGTGTAGCCGTGCTGCTTGTGCCTTTGAATAAAGTCCTGGCTTCCCGAATTCTGGAAAACAATAAGCATATGCTGCAGCACAAAGATGGCAGAGTGAAGTTAATGACAGAGATCCTCTTTGGAATTCGTGTCCTGAAGTACTATAATTGGGAGGAGCACTTCACTCAAAAGATCGAGGAGGCCCGTAAAAAAGAGCTGCATCACCTGAAACTTCTGAAGTACCTGGATGCAGTGTGTGTGTACACCTGGGCTGCTCTGCCCGTGGTCATCTCGATCCTCACCTTCATCACATACGTTCTGCTAGGAAACAATCTCACTGCTGCAAAGGTGTTTAGTACTCTGGCTCTCGTGGGGATGCTCATTCTGCCTCTCAATGCCTTCCCCTGGGTGCTAAATGGGACCCTGGAGGCTAAAGTGTCTTTGGATCGCATTCAGCGCTTCCTCGCAGTACAGGACCAGGATCTCTCTGTCTATTACAGTCAAGTGTGTCCCGAGGACCCTCCTTCTGCTGTTCAGATGGTCCAAGCGAGCTTCTCCTGGAAGCAGTCAGAGGAAGCAGATTCTGAAGGGTCACCACCTCGCAGCTTTTACCTTCATGCACTAAATCTCAATGTTAAAATGGGCTCTCTGGTGGTGGTGGTAGGAAAGGTTGGCTGTGGGAAAAGCTCCTTGCTGGCCGCTATAACAGGAGAGCTGACCAGGTGTGGCGGGGAAGTGTTTGTTCAGGGAAGAGAGCAGGGGTTTGGATTGGCCGTCCAGGAGCCGTGGATCCAGCATGCAACAGTGCAAGATAACATTCTCTTCGGCAGGGATTATGACAACATGTTTTATCAATCTGTGATACAGGCCTGTGCCCTGGCTGATGACTTAAATATCTTACCTGGTGGTGATCAGACAGAGGTCGGAGAGAACGGCGTGACTCTGAGCGGAGGACAGAAAAGCCGCCTTGCTTTGGCCCGGGCTGTTTATATGGATAAAGAAATCTATTTGCTGGATGATCCCTTAGCGGCTGTGGATGCGGATGTTGCCCACCACCTCATGGAGAAATGCATCCTGGGAATTCTCAAGGACAAGACCAGAATTCTTTGCACTCATCGTATCGAGTTTGTGGATAAGGCAGATGTGGTGGTGCTGATGGACAATGGGATGATTGTAAAAACAGGTACCATGCACTTGAACTTTGATTTGATTAATACAAACAAACCTTCAGATTCTGCAGGCAGTGAGGAAATGGAAGCAAGTgagccggagctgaaggcagaacTGGAGATGTTTGGAGAAGAGCAGAAGCAAATGGGCACGTTGTCCTGGGCTGTTTATCGCTCCTATTGGAAAGCAGTTGGTGGATGCATGGCTGTGGCCGTTTTGCTCGCCCTCTTCCTAATGCAGGCCTCCAAAAATGTGTCAGACTGGTGGCTTTCACATTGGATTTCTCATATGAAGGACAATATGACTGAGCTGGTGTCGGTCTCAGCCACTCCACTCTTAATGCTGAGTTTCCTTTCTCCTGGCAGACTTGTGTTTAATGCACCAGCCCGAGGTTCAGAGTCTTCTGGGAATATGAGCTCAGAGCTGAAGTTTTATATGACAGTGTATGGATCTCTGGCAGCAGCAAACACAGTTTTCACCGCCGCTCGAGCATTTCTCTTTGCCTATGGAGCAATCTGCGCTGCTACTGTCGTTCATAAGAGACTGCTGTCCAGTGTGCTTAAGGCCACTATGACGTTTTTTGACACAACACCATTGGGTCGCATCCTGAACCGTTTCTCCTCAGACATTTACAGTGTGGACGACTCTCTCCCCTTCGTCTTAAACATCCTCCTGGCCAACGTGTTTGGTCTTCTTGGGATGCTCATCGTCATGAGTTACGGGCTTCCTTGGGTTCTGCTGCCTTTGGTTCCTTTGGGGGCGCTTTACTACCAAACTCAGTGTTTTTATCGTTACTCGTCCCGTGAGCTGAAACGCCTGTGCAGCCTCACACTCTCTCCAGTTTATTCACACTTCTCAGAAACCCTCAGCGGTCTGTCCACGGTGCGGGGCAGTGGACACACTACCAGATTTGAGGAGGAGAATGAGAGGCGTCTTGAACAGAATcagcgctgtctctttaatagtaATGCTGCCATGCAGTGGTTGGACATACGGCTGCAGATGATTGCTGTGACTGTAGTAACAGGCATCAGTGTGATCGCAGTGATCCAGCATCAGCTCAAATCCATCGATCCAGGTCTGGTGGGTCTGTCTCTGTCCTATGCCCTATCCATCACCAACCTGCTGTCAGGGCTGATTTTCAGCTATGCACAGACGGAGATGCAGTTGGTGAGCATTGAGCGCACTGAGGAGTATTCAACCAGCATCCCGCAGGAGCCCCAGCAAGCCAGCCTTGAGGTTTTGGACAGGTGGCCTGAAAGAGCTCGTGTTGAGTTTGTAGATGTGGTGTTGTCATACCGGCCAGGTTTGCCCAACGCTCTGGATGGGGTCAGTGTGGAGGTGTTGCCCGGTGAGAAGATTGGCATAGTGGGCCGTACAGGATCAGGGAAATCCTCATTGTTCCTCGCACTCTTCCGTATGGTGGAGCTCAACCAGGGTCAAATCTTGCTCGATGGGGTCGACATCAGCTCAGTCAGGCTCAGTGACCTGCGATCAAAACTGGCTATCATACCGCAGGATCCCTTTCTGTTCTCCAGCTCTGTGCGAGAAAATCTTGATCCTCACGGTCGTCATCCGGACTACAGACTGCTAGAGGCTCTTGAGCAATGCCACCTTGGAAATGTAGTTCAGAGAAACGGTGGCCTGGATTCAGAGGTTGGAGAGAGAGGAAAGTCTCTGTCTGTGGGCCAGAGGCAGCTGTTGTGTCTCGCTCGTGCTCTGCTAACAGAAGCTAATATTTTATGCATTGATGAGGCCACGGCGAGTGTCGACCAGAAGACTGACATGCTGCTACAGAAAACCATCAGAGAAAAATTCAAGGATAAAACTGTTCTCACCATCGCCCACAGACTGAACACAATTATGGACTCCGACAAAGTATTGGTGATGCATGCTGGGAAGGTGGTGGAGTTTGACAGCCCTGCTACTCTGTGCCAAAGAGAAGACTCAGCTTTCCAGAAACTTTTACGTGGAGGGGAAGACCAAGTTTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
ko02010 ABC transporters
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050517-24 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ABCC10 (ATP binding cassette subfamily C member 10).

Ensembl:

ensembl_id ENSDART00000193683

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008770 lncRNA downstream 205444 11646506 ~ 11706136 (-) True XLOC_003962
TCONS_00007573 lncRNA downstream 205487 11639483 ~ 11706093 (-) False XLOC_003962
TCONS_00007574 lncRNA downstream 205496 11639653 ~ 11706084 (-) False XLOC_003962
TCONS_00008769 lncRNA downstream 309700 11594994 ~ 11601880 (-) True XLOC_003960
TCONS_00007564 lncRNA downstream 459645 11451660 ~ 11451935 (-) True XLOC_003955
TCONS_00007591 lncRNA upstream 200690 12165723 ~ 12166007 (-) True XLOC_003972
TCONS_00007594 lncRNA upstream 220821 12185854 ~ 12186144 (-) True XLOC_003975
TCONS_00007600 lncRNA upstream 248116 12213149 ~ 12213431 (-) True XLOC_003977
TCONS_00007602 lncRNA upstream 253073 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00008771 lncRNA upstream 464350 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00007581 mRNA downstream 1355 11891580 ~ 11910225 (-) True XLOC_003965
TCONS_00007579 mRNA downstream 21579 11866278 ~ 11890001 (-) False XLOC_003964
TCONS_00007580 mRNA downstream 28598 11867297 ~ 11882982 (-) True XLOC_003964
TCONS_00007577 mRNA downstream 33481 11844123 ~ 11878099 (-) False XLOC_003964
TCONS_00007576 mRNA downstream 118814 11783464 ~ 11792766 (-) True XLOC_003963
TCONS_00007584 mRNA upstream 18432 11983465 ~ 12008001 (-) True XLOC_003967
TCONS_00007585 mRNA upstream 44702 12009735 ~ 12051283 (-) False XLOC_003968
TCONS_00007586 mRNA upstream 46147 12011180 ~ 12051805 (-) True XLOC_003968
TCONS_00007588 mRNA upstream 131166 12096199 ~ 12104917 (-) True XLOC_003969
TCONS_00007589 mRNA upstream 143322 12108355 ~ 12158412 (-) True XLOC_003970
TCONS_00007578 other downstream 40609 11845601 ~ 11870971 (-) False XLOC_003964
TCONS_00007569 other downstream 337820 11566351 ~ 11573760 (-) True XLOC_003959
TCONS_00007563 other downstream 464095 11447189 ~ 11447485 (-) True XLOC_003954
TCONS_00007562 other downstream 465595 11445689 ~ 11445985 (-) True XLOC_003953
TCONS_00007561 other downstream 473393 11437891 ~ 11438187 (-) True XLOC_003952
TCONS_00007587 other upstream 131166 12096199 ~ 12104916 (-) False XLOC_003969
TCONS_00007590 other upstream 196625 12161658 ~ 12161955 (-) True XLOC_003971
TCONS_00007592 other upstream 202969 12168002 ~ 12168298 (-) True XLOC_003973
TCONS_00007593 other upstream 204328 12169361 ~ 12169654 (-) True XLOC_003974
TCONS_00007605 other upstream 255857 12220890 ~ 12221186 (-) True XLOC_003979

Expression Profile

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