RNA id: TCONS_00007586


Basic Information

Item Value
RNA id TCONS_00007586
length 3280
RNA type mRNA
GC content 0.53
exon number 9
gene id XLOC_003968
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12009735 ~ 12051805 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAAAGGCGATGCAATTGCAATTGATGCATCATAAAACATCAGTTGGCCAGGCCATCTTCCAGACAACAGCGCGCTAAATGACATGAAAGCAACATTACAGCACGGTGCACGTCACTAAGGGGGACAGCACATAGCCTGCAGCCAAGTGGACAGCAATGGCACCGATAAGACCAAACACGAAACGCATCGAATTTgcggaagtgagcgggcgggtgGGGCCTCGACAGTAATGTGACCACAGACGCCGTTAGGATTGCGTGAAACGAAGCGTTATGTATGACCCTACAAAGACCCGTTGCGATTTTTAAGGCCGGACGCGAAATGAGACGAGGACGTGCGCAATGTTGAAGGAGCGACTGAAATAGAGTTTATATGCACTAATTGTCTGGCGCTGTGTGAGGGGGCTAACTAACACCAAGAGGATtaccatcatcaccatcatcacacAACCGAGATCTCATGACTGGAGCAATGTGAAACGCCGATATCGCTCATTCCTTCAGTATATTGAGGAATAATAATGAACAACGCGCAAGATATGTCTCCCGATTTTGTCTTGATGCGCCTGGTCTCCGCGGCCGAGGATGACCGCTTGGACGAGGAGAATGGGAATCTGTCGTCGGGCACTGGACTGACAGTGGCTATCAAGGGGAACTTTGAATGCACGCAGAATCACGGCATTATCTCGGCCGTGAACAAAGCTCCGCAGGCCAGCGGAACGGAGGCACCTGACGCGGGAGTGATGGCGACCAGACCTGCGCTGTCTGTGCCGCCGCCTCCTCTCCATTCAGCCGAGGCCCACGGGTACGATCTCACCCACCGAGGTGGAATGGGGCCTCAGCTGTTGGTATTCAGAAACATATCGAGAGACTCTGAAGGATTTTCCGAGAACAAGTCGGAGGATCAGCGCAGGGCTTTTGAGGACCAAGCGCTACTCGCTTCCGAGTCCGGCGCTGTGGACGCTCAGCATCCGCCTACATGGACGCTGCATCCACAGCTCAAACTGCCAGCGGTTGCTACGGATACGGATGGAGGCGAGCTCTGCCACCGGCATCGCTTGATCACAGACCAACAGGACTGGCCGCCGGTTGTGGAGCACAAAACGAGCTCGATGACAGTGCAGCGGCAGCTCCAGCTCCCCGAAGGTCCAGTTCTGGAGCTCGCGAGGAAATTCGGCGAGCTGGGAGTTGCTCCCGTACCCGAATTTCTGCTCAAGGATGGCGAGCTGCAGCACTGCTCCTGTCAAAGCGTGCTGGGCTCGGCGGGGATGCGGCAGGGAGAGGACCCGACCGAGACCAGCGATGCTTTGCTGGTGCTGGAGGGCCTCGGGTCAGAGGAGGTGAACGGCCTGGGCATCAACGCCTGTCAGAAGCCCGAGTCCCAGACCACGGAGCCCGGCGCGTTTGCGCTAAAGTGTTTCCCCTCGGTTCTGTCCGGGCAAGCTATGGGGGTGTCCGGGGGACTTTGCTCGCCGACGTGTTGCTTGTTGCGAGACTCTGTAAACAACAGGCCCCAGGCTCCCGCCGCTGACAAACTGATTCCCGAGGTGATTTCCCAAGCCGAACCCAGCCAGGAGACGCCATGCTCCAGCCAGGCGTCCACGCCGAAGGCCCGGAGTTCGAGCCGGGCGCATCTTTCCGCAGCGAGCGGGGGAGAGAAGACTCTAAAAGTACCAGGGAAATCCAGGAAGGGCTCGCTTAAAATCCGACTCAGTAAACTTTTCAGAACTAAAAGCTGTAGTGGCTCTAACAACCTTTTGGACAAAAGACCTTCAGTCACGTTCTCCATATCCTCTGCGGGAAGTTTAGTTGACATGTCTGGAGCTATCGGTGGAGAACAAGACACGAGCAGCCAACCTGGACTAACAAGGGCACAAAGTGCTTTCTCTGCAGCCTCTTTTACTCCAGTTTTCACAgGAGAGACGGTGTCGTTAGTTGATGTGGACATCTCACAGCGAGGAAGAAACTCTCCTCATCCTCCCACTCCTCCACCTCCCCCTCGACGGAGTCTCAGTCTGCTGGATGCTTTCTTCCGGGCACTTCCTCATTCAGCTGCATCACCAATGGAGAATCCAGCCCCTGCCAGACTAGCTCCGCCGCAAGTCATGTGCCCGCTAAGAGGGGCCGATTCCAGTAGCTTCACTGCCAGCCTGAGAGAGCTGGAGCGGtgtgGCTGGTATTGGGGGCCGATGAACTGGGAGGATGCTGAAATGAAGCTGAGAGGGAAGCCTGATGGCTCGTTTTTGGTGCGGGACAGTTCAGACCCACGATACATCCTCAGCCTCAGCTTTCGCTCACAGGGAGTCACACACCACACGCGTATGGAGCACTACAGAGGAACCTTCAGTTTATGGTGCCACCCTAAGTTTGAGGATCGCTGTCATTCTGTGGTGGAGTTCATCGAGCGAGCCATTATGCACTCAAAAAATGGGAAATTCCTCTACTTCCTACGTTCACGTGTACCTGGGTTGCCCCCCACCCCTGTACAGCTGCTTTATCCAGTCTCACGCTTCAGCAATGTAAAATCCCTCCAGCATCTGTGCCGTTTCTGCATCCGACAGCTCGTCCGCATAGATCACATCCAGGAGCTGCCTCTGCCCAAACCGCTCATTGTCTACTTGAGGAAGTTCTATTACTATGATCCAGAGGAAGAGATGTACCTGTCAATCAAAGGCATGCGCCAGGCAGCAGGAGTGGAACAGGAAGCAGAGTCTGAAACATAGCCAGCCGGATCGGTCCGTTTCACTAATTTCTATGTGTGGATATTGGATGGAACAGCGCATGGACACTTCCTGGTGCACAGCTCCCTGCCAGTCTTCCAGCAGACGCCAATGAACATCAGCCGACTGGCATCTCCTCTTTGACCAATATCGGACAGAGGGAGATCAGAGGAGTGCTGGAATACTGTCTATGTTGAGCAGGCAAATCAAATTCAGAGACTTTGACTTGATCGACAAAGGACTCGAAAGACTGCTAAAAGTGGActtcaaatattaaattaaataagatacGGACTGAGGACATTTGACTTGGGGTACTAGCAAACGCCTTCATCTGTAGGTTATATTACGCTGGAGTTTTTAAAAACTGGCCAGTTTGTGAATCCGTCTCTGTTTGGTTCTTCTTTCTTTCCCCATCAGGCCCCCTTGCCCTGGGTGGAGTGTGTGACCCCTTTATTTGTTCTTTCCCTGATTGTAACTTCAGTCTGATCAGGCCACATGAACTGTATTTTGAGTAAAAGACAAAGTAAACTTGAAAATAAGTGCTGGTATATTTGAT

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0046935 1-phosphatidylinositol-3-kinase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-125 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within intracellular signal transduction; negative regulation of signal transduction; and regulation of growth. Predicted to be part of phosphatidylinositol 3-kinase complex. Orthologous to human SOCS7 (suppressor of cytokine signaling 7).

Ensembl:

ensembl_id ENSDART00000182744

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008770 lncRNA downstream 305044 11646506 ~ 11706136 (-) True XLOC_003962
TCONS_00007573 lncRNA downstream 305087 11639483 ~ 11706093 (-) False XLOC_003962
TCONS_00007574 lncRNA downstream 305096 11639653 ~ 11706084 (-) False XLOC_003962
TCONS_00008769 lncRNA downstream 409300 11594994 ~ 11601880 (-) True XLOC_003960
TCONS_00007564 lncRNA downstream 559245 11451660 ~ 11451935 (-) True XLOC_003955
TCONS_00007591 lncRNA upstream 113918 12165723 ~ 12166007 (-) True XLOC_003972
TCONS_00007594 lncRNA upstream 134049 12185854 ~ 12186144 (-) True XLOC_003975
TCONS_00007600 lncRNA upstream 161344 12213149 ~ 12213431 (-) True XLOC_003977
TCONS_00007602 lncRNA upstream 166301 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00008771 lncRNA upstream 377578 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00007584 mRNA downstream 3179 11983465 ~ 12008001 (-) True XLOC_003967
TCONS_00007583 mRNA downstream 46147 11911580 ~ 11965033 (-) True XLOC_003966
TCONS_00007582 mRNA downstream 49474 11911399 ~ 11961706 (-) False XLOC_003966
TCONS_00007581 mRNA downstream 100955 11891580 ~ 11910225 (-) True XLOC_003965
TCONS_00007580 mRNA downstream 128198 11867297 ~ 11882982 (-) True XLOC_003964
TCONS_00007588 mRNA upstream 44394 12096199 ~ 12104917 (-) True XLOC_003969
TCONS_00007589 mRNA upstream 56550 12108355 ~ 12158412 (-) True XLOC_003970
TCONS_00007595 mRNA upstream 136315 12188120 ~ 12198904 (-) False XLOC_003976
TCONS_00007596 mRNA upstream 136444 12188249 ~ 12198765 (-) False XLOC_003976
TCONS_00007597 mRNA upstream 138363 12190168 ~ 12198904 (-) False XLOC_003976
TCONS_00007578 other downstream 140209 11845601 ~ 11870971 (-) False XLOC_003964
TCONS_00007569 other downstream 437420 11566351 ~ 11573760 (-) True XLOC_003959
TCONS_00007563 other downstream 563695 11447189 ~ 11447485 (-) True XLOC_003954
TCONS_00007562 other downstream 565195 11445689 ~ 11445985 (-) True XLOC_003953
TCONS_00007561 other downstream 572993 11437891 ~ 11438187 (-) True XLOC_003952
TCONS_00007587 other upstream 44394 12096199 ~ 12104916 (-) False XLOC_003969
TCONS_00007590 other upstream 109853 12161658 ~ 12161955 (-) True XLOC_003971
TCONS_00007592 other upstream 116197 12168002 ~ 12168298 (-) True XLOC_003973
TCONS_00007593 other upstream 117556 12169361 ~ 12169654 (-) True XLOC_003974
TCONS_00007605 other upstream 169085 12220890 ~ 12221186 (-) True XLOC_003979

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000305_00091792_00117128.mRNA True 3815 mRNA 0.56 13 CI01000305 91647 ~ 117128 (+)