RNA id: TCONS_00007598


Basic Information

Item Value
RNA id TCONS_00007598
length 1525
RNA type mRNA
GC content 0.49
exon number 8
gene id XLOC_003976
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12188120 ~ 12198914 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCCTACCTTCATCTCCCGTCCACAAAATGCAGGAGCCGCCCTGAGTCCCGATCTCTATAAGAGATCAGCGCTGGGCTCTAAGGTGTGATTCTCTTCAGGACATTTCTGCCAGTCTGTTGGTTCATCTCAGCTCTGCATCCATCTACCATGTCGTGCTCTCTCCGTACGTCATCTTGCCAAGGTCCCAAGACCATGACCTCAAAATCCATAGTCACCCCGATTCGCTGTGGTACAGTAACTGCTTGTGCACCCAAGGCCTATAGTATAACTGGCTGTGGTTTTGGAGGAGGCTCCCGCATCTCTTCCTCATGTTACCGCCGGGTTGGTTGTTACCCAGATTTGCTTTGCAAAATTAGTGGAGGATATGGCAGGCTGAACAGTGTACTCACAGCTAAGAGCTGTGACTACACCCAGCTGAATGAGAAGACCACCATGCAGAACCTGAATGATCGTCTGGCGTCCTACATAGAGAAGGTGCGCTGCTTAGAGGCTGCCAATGCCACTCTGGAGCAGCAGATCAGGGATTATTATGAGAAGAAGGGGCCGATCTGCCAGAGGGACTACAGCTGCTACTGGAACACCATCAACTGCTTGAAGGAACAGATTGCAGCTGCAAATGTCAACAACGCCAACATCCTTCTGCAGATCGACAACTCTAAACTGGCTGCTGATGACTTCAGGATAAAATATGAGCATGAGATAGCAGTGCGGCAGTGTGTTGAGTCTGACATCGCCAACCTGCGCCGACTGCTGGATCAAGCAACCTTGAGCAAGGCTGAACTAGAGAACCAGATCGAGACTCTGATTGGAGATCTAGAGTGTTTGAAGAAGAACCACCAGGAGGATGTGGCGGCTCTAATGTGTCAGTTGACAAACTCAAAAGTGTGCGTGGAAGTGGACGCCGCTCCTCAGCAAGACCTGAATAAGATTTTGGATGACATTCGTTGTCATTATGAGAACATCATAGACAAACACCGCAGAGAACAGGAGTGCTGGTTTAAAGAGAAGACGGCACAACTGTGCAAAGATGTGGCTGGTGACACAGAGTGCCTTGAAACCTCGAGGTCACAGATATCAGATCTGCGGAGGACCTTGCAGTGCCTTGAGATCGAGCTACAGTCTCAACTCAGCATGAAATGCGCACTTGAGGCTTCACTGCGGGAAACAGAGGCGCGTTACAGCACTATGCTAGCAGGCTATCAGAAACACATCAACACATATGAGGCAGAGCTCTCTCAGGTTCGCGCTGGCATTGAGCAGCAGGGCAGAGATTATGATGCCCTGCTGGACATCAAGAGCCGCCTGGAGCAGGAGATCGCCACCTACAGGTGCCTCCTGGAAAATCAGCCCATTAAGACTCAAGAGGGGGGCGTTTTTGTCTGTTCAACACCAGTGGAAACAGTAGCATGTAAACAATTCATATAAACAACATCAGATGCAAGCAAAAAATGTAACAGAATACAACTGTATCAAGTGCACTGTGCTGACTGCCTTACAATTCACCATTAAAGATTGATTAAGAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-88 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament.

Ensembl:

ensembl_id ENSDART00000041533

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007594 lncRNA downstream 4427 12185854 ~ 12186144 (-) True XLOC_003975
TCONS_00007591 lncRNA downstream 24564 12165723 ~ 12166007 (-) True XLOC_003972
TCONS_00008770 lncRNA downstream 484435 11646506 ~ 11706136 (-) True XLOC_003962
TCONS_00007573 lncRNA downstream 484478 11639483 ~ 11706093 (-) False XLOC_003962
TCONS_00007600 lncRNA upstream 14235 12213149 ~ 12213431 (-) True XLOC_003977
TCONS_00007602 lncRNA upstream 19192 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00008771 lncRNA upstream 230469 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00008772 lncRNA upstream 230469 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00008773 lncRNA upstream 231241 12430155 ~ 12465409 (-) True XLOC_003998
TCONS_00007589 mRNA downstream 32159 12108355 ~ 12158412 (-) True XLOC_003970
TCONS_00007588 mRNA downstream 85654 12096199 ~ 12104917 (-) True XLOC_003969
TCONS_00007586 mRNA downstream 138766 12011180 ~ 12051805 (-) True XLOC_003968
TCONS_00007585 mRNA downstream 139288 12009735 ~ 12051283 (-) False XLOC_003968
TCONS_00007584 mRNA downstream 182570 11983465 ~ 12008001 (-) True XLOC_003967
TCONS_00007601 mRNA upstream 19192 12218106 ~ 12219931 (-) False XLOC_003978
TCONS_00007603 mRNA upstream 19192 12218106 ~ 12220002 (-) False XLOC_003978
TCONS_00007604 mRNA upstream 19600 12218514 ~ 12219829 (-) True XLOC_003978
TCONS_00007607 mRNA upstream 30916 12229830 ~ 12232929 (-) False XLOC_003980
TCONS_00007608 mRNA upstream 31320 12230234 ~ 12232769 (-) True XLOC_003980
TCONS_00007593 other downstream 20917 12169361 ~ 12169654 (-) True XLOC_003974
TCONS_00007592 other downstream 22273 12168002 ~ 12168298 (-) True XLOC_003973
TCONS_00007590 other downstream 28616 12161658 ~ 12161955 (-) True XLOC_003971
TCONS_00007587 other downstream 85655 12096199 ~ 12104916 (-) False XLOC_003969
TCONS_00007578 other downstream 319600 11845601 ~ 11870971 (-) False XLOC_003964
TCONS_00007605 other upstream 21976 12220890 ~ 12221186 (-) True XLOC_003979
TCONS_00007606 other upstream 30916 12229830 ~ 12232900 (-) False XLOC_003980
TCONS_00007611 other upstream 54946 12253860 ~ 12254156 (-) True XLOC_003983
TCONS_00007613 other upstream 90458 12289372 ~ 12289668 (-) True XLOC_003985
TCONS_00007616 other upstream 124716 12323630 ~ 12323926 (-) True XLOC_003988

Expression Profile

//