RNA id: TCONS_00007618


Basic Information

Item Value
RNA id TCONS_00007618
length 525
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_003989
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12332626 ~ 12334546 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGCGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCTAAAAACACATCGGTCATCATCAGACGGGTCCCTGCTGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGAACCATCTGCAAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCACAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-211 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Is expressed in Kupffer's vesicle; forerunner cell group; nervous system; and pronephric duct.

Ensembl:

ensembl_id ENSDART00000181484

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007602 lncRNA downstream 113062 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00007600 lncRNA downstream 119600 12213149 ~ 12213431 (-) True XLOC_003977
TCONS_00007594 lncRNA downstream 146887 12185854 ~ 12186144 (-) True XLOC_003975
TCONS_00007591 lncRNA downstream 167024 12165723 ~ 12166007 (-) True XLOC_003972
TCONS_00008770 lncRNA downstream 626895 11646506 ~ 11706136 (-) True XLOC_003962
TCONS_00008771 lncRNA upstream 95009 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00008772 lncRNA upstream 95009 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00008773 lncRNA upstream 95781 12430155 ~ 12465409 (-) True XLOC_003998
TCONS_00008774 lncRNA upstream 129326 12463700 ~ 12464486 (-) True XLOC_004002
TCONS_00007671 lncRNA upstream 399757 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007615 mRNA downstream 10346 12321345 ~ 12322685 (-) True XLOC_003987
TCONS_00007614 mRNA downstream 31092 12300579 ~ 12301939 (-) True XLOC_003986
TCONS_00007612 mRNA downstream 44705 12286940 ~ 12288326 (-) True XLOC_003984
TCONS_00007610 mRNA downstream 80193 12251840 ~ 12252838 (-) True XLOC_003982
TCONS_00007609 mRNA downstream 89736 12241936 ~ 12243295 (-) True XLOC_003981
TCONS_00007619 mRNA upstream 14105 12348479 ~ 12350419 (-) False XLOC_003990
TCONS_00007620 mRNA upstream 14510 12348884 ~ 12350237 (-) True XLOC_003990
TCONS_00007622 mRNA upstream 27857 12362231 ~ 12364122 (-) False XLOC_003992
TCONS_00007623 mRNA upstream 27955 12362329 ~ 12363941 (-) True XLOC_003992
TCONS_00007624 mRNA upstream 43247 12377621 ~ 12379541 (-) False XLOC_003993
TCONS_00007616 other downstream 9105 12323630 ~ 12323926 (-) True XLOC_003988
TCONS_00007613 other downstream 43363 12289372 ~ 12289668 (-) True XLOC_003985
TCONS_00007611 other downstream 78875 12253860 ~ 12254156 (-) True XLOC_003983
TCONS_00007606 other downstream 100131 12229830 ~ 12232900 (-) False XLOC_003980
TCONS_00007605 other downstream 111845 12220890 ~ 12221186 (-) True XLOC_003979
TCONS_00007621 other upstream 16885 12351259 ~ 12351555 (-) True XLOC_003991
TCONS_00007628 other upstream 61144 12395518 ~ 12395814 (-) True XLOC_003995
TCONS_00007634 other upstream 103710 12438084 ~ 12438380 (-) True XLOC_004000
TCONS_00007645 other upstream 165592 12499966 ~ 12500262 (-) True XLOC_004006
TCONS_00007648 other upstream 178592 12512966 ~ 12513262 (-) True XLOC_004008

Expression Profile

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