RNA id: TCONS_00008459


Basic Information

Item Value
RNA id TCONS_00008459
length 295
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id XLOC_003946
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11404596 ~ 11404890 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGGGTTCAGTGGCGCGCGCCTGTAATCCAAGTTACTGGGAGGCTGAGTCTGCGGATCGCTTAAGTTCAGGGCTTCTGAACTGCAGTGGACTATGTTGATCGGGTGTCCACGCTAAGTTCGGTATCGATATGGTGCTGCTGGGGGAGCTTGGGACCACCAGGTCGTTTAAGGAGGGGTGAACCGACAAAGGCCGGAGACGGAGCAGGTCAAAGCCCCCGTGCTGATCAGTAGTGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAgcgacacagagagacgcagact

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008458 lncRNA downstream 47409 11356893 ~ 11357187 (-) True XLOC_003941
TCONS_00008457 lncRNA downstream 50328 11353974 ~ 11354268 (-) True XLOC_003940
TCONS_00008456 lncRNA downstream 61022 11343280 ~ 11343574 (-) True XLOC_003939
TCONS_00007547 lncRNA downstream 78976 11319190 ~ 11325620 (-) False XLOC_003936
TCONS_00007541 lncRNA downstream 544490 10859024 ~ 10860106 (-) True XLOC_003933
TCONS_00007564 lncRNA upstream 46770 11451660 ~ 11451935 (-) True XLOC_003955
TCONS_00008769 lncRNA upstream 190104 11594994 ~ 11601880 (-) True XLOC_003960
TCONS_00007573 lncRNA upstream 234593 11639483 ~ 11706093 (-) False XLOC_003962
TCONS_00007574 lncRNA upstream 234763 11639653 ~ 11706084 (-) False XLOC_003962
TCONS_00008770 lncRNA upstream 241616 11646506 ~ 11706136 (-) True XLOC_003962
TCONS_00007550 mRNA downstream 67610 11332652 ~ 11336986 (-) True XLOC_003937
TCONS_00007546 mRNA downstream 73450 11319141 ~ 11331146 (-) False XLOC_003936
TCONS_00007545 mRNA downstream 73544 11319141 ~ 11331052 (-) False XLOC_003936
TCONS_00007544 mRNA downstream 103239 11275540 ~ 11301357 (-) True XLOC_003935
TCONS_00007543 mRNA downstream 103313 11274940 ~ 11301283 (-) False XLOC_003935
TCONS_00007565 mRNA upstream 49655 11454545 ~ 11458208 (-) True XLOC_003956
TCONS_00007566 mRNA upstream 63676 11468566 ~ 11471857 (-) True XLOC_003957
TCONS_00007567 mRNA upstream 110888 11515778 ~ 11518469 (-) True XLOC_003958
TCONS_00007568 mRNA upstream 161106 11565996 ~ 11575070 (-) False XLOC_003959
TCONS_00007571 mRNA upstream 191083 11595973 ~ 11625630 (-) False XLOC_003961
TCONS_00007555 other downstream 20466 11383833 ~ 11384130 (-) True XLOC_003945
TCONS_00007554 other downstream 23392 11380904 ~ 11381204 (-) True XLOC_003944
TCONS_00007553 other downstream 33943 11370455 ~ 11370653 (-) True XLOC_003943
TCONS_00007552 other downstream 36706 11367594 ~ 11367890 (-) True XLOC_003942
TCONS_00007551 other downstream 65496 11338804 ~ 11339100 (-) True XLOC_003938
TCONS_00007556 other upstream 7712 11412602 ~ 11412898 (-) True XLOC_003947
TCONS_00007557 other upstream 10623 11415513 ~ 11415809 (-) True XLOC_003948
TCONS_00007558 other upstream 19191 11424081 ~ 11424377 (-) True XLOC_003949
TCONS_00007559 other upstream 21988 11426878 ~ 11427174 (-) True XLOC_003950
TCONS_00007560 other upstream 30557 11435447 ~ 11435743 (-) True XLOC_003951

Expression Profile

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