RNA id: TCONS_00008752


Basic Information

Item Value
RNA id TCONS_00008752
length 845
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id XLOC_003891
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6429973 ~ 6431348 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAAGTAACACCCTCTTTCCCTCACTTGTCCTTGGCCTCCGTGATCTCCTGCGTGGCGGCTCTGAGCTGCTCGTCTTTGCGGATGAGACTCTCCGCCTGCTCCCGCACGGTCCTCTCCGCCTCTCGCAGCCGCTGCTCCAGCTCCGACACCCGGCGGTGCAGCGCGGCCAGATGCGCGTTCGCCTCTCGGATCTGCACCGGAGACGGGGACGACATGATGTCCGGGATGCGGAAGATAAAAACACTCTCATCCACGatatatacattagatgtcgcctggcctattgttgtctattggacggaatgcgtcaatagcgccgccatcttggtacagggtagcgctcctttgaaatgaatgcgggagcaaggtacagtggaggactgtggccatccaaaagtttttatgcagcggatgcccttccagccgcaacccatctctgggaaacatccacacacacattcacacacacacactacggacaatttaacctacccaattcacctgtaccgcatgtctttggactgtgggggaaaccggagcacccggaggaaacccacgcgaacgcagggagaacatgcaaactccacacagaaacgctgactgagccgaggctcgaaccagcgaccttcctgctgtgaggcgacagcactacctaccgcgccactgcttcgccaagaatatgttttattatataaacttgttttttattttattcacatgCTCTTATAGGCCTATATATAAGATTTTGTCTGCATATTTAagtatatttgttttgttgtatgaATATTAAGGACTTTTGAATTTGTTAACTCAAAGGTGTTGTTCAGTAAAAACAGATATCATC

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008750 lncRNA downstream 105416 6316654 ~ 6324557 (-) True XLOC_003887
TCONS_00008450 lncRNA downstream 151275 6276900 ~ 6278698 (-) True XLOC_003886
TCONS_00007448 lncRNA downstream 167264 6261693 ~ 6262709 (-) True XLOC_003885
TCONS_00007445 lncRNA downstream 223417 6204570 ~ 6206556 (-) True XLOC_003884
TCONS_00007440 lncRNA downstream 241560 6187382 ~ 6188413 (-) True XLOC_003883
TCONS_00008753 lncRNA upstream 23686 6455034 ~ 6456300 (-) True XLOC_003893
TCONS_00008754 lncRNA upstream 361198 6792546 ~ 6799938 (-) True XLOC_003895
TCONS_00007460 lncRNA upstream 437968 6869316 ~ 6870035 (-) False XLOC_003897
TCONS_00008451 lncRNA upstream 914452 7345800 ~ 7349497 (-) False XLOC_003908
TCONS_00008755 lncRNA upstream 914578 7345926 ~ 7349386 (-) False XLOC_003908
TCONS_00007451 mRNA downstream 268 6411169 ~ 6429705 (-) True XLOC_003889
TCONS_00007452 mRNA downstream 9056 6417450 ~ 6420917 (-) True XLOC_003890
TCONS_00007449 mRNA downstream 43401 6349443 ~ 6386572 (-) False XLOC_003888
TCONS_00007450 mRNA downstream 75405 6350030 ~ 6354568 (-) True XLOC_003888
TCONS_00007447 mRNA downstream 164250 6261682 ~ 6265723 (-) False XLOC_003885
TCONS_00007453 mRNA upstream 14887 6446235 ~ 6452492 (-) False XLOC_003892
TCONS_00007454 mRNA upstream 15577 6446925 ~ 6452469 (-) False XLOC_003892
TCONS_00007455 mRNA upstream 16073 6447421 ~ 6452444 (-) True XLOC_003892
TCONS_00007457 mRNA upstream 428528 6859876 ~ 6868287 (-) False XLOC_003896
TCONS_00007458 mRNA upstream 428528 6859876 ~ 6868474 (-) True XLOC_003896
TCONS_00007441 other downstream 223384 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007438 other downstream 357907 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007400 other downstream 2476136 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 5341458 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 5450225 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007456 other upstream 349360 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 512952 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 684899 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007494 other upstream 1680021 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007548 other upstream 4894174 11325522 ~ 11331050 (-) False XLOC_003936

Expression Profile

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