RNA id: TCONS_00007455


Basic Information

Item Value
RNA id TCONS_00007455
length 539
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_003892
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6446235 ~ 6452492 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACGTGGAAGCAGACAGGGAAAACATCAGGTATCCTGTTTACACTGCAGTTTATCTAgataattataaaagttttaTGATATAAAGGCAACTTTAGTACtagtaaaactaaataataataataatttgtcaacAGCATGTCCTCACCCGGTTTTACTGACATCTTCCATTGTGAAGACACCCAACAATCAAAGGGTCTGTTCTCATACACTGACGACGGACTAAATGATAGTTTGGATGGgagttCAACTGATTTGACCGATGTTTTTGAGGAGGATTTCTGTGAGGGTGAGCTATGGATTCCTCCAAACGATGATGTGACGCAGCAAATTGCCACCCAGCTTGAGAACTACCTTTCTGATGAGAACCTATCAGATGATGCTTTTCTCCTAAAACACGTCCAGAGAAACAAGATGGGTTACGTTAGTTTAAAGCTGCTGACATCTTTCAAAAAGATTCGAGATCTCACACGTGACTGGCGCACAACACTGGCGGCAGCAAGAACCTCTCTGCAGCTGGAAGTGAATGAGATGGGAACC

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-244 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA processing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Orthologous to human LARP6 (La ribonucleoprotein 6, translational regulator).

Ensembl:

ensembl_id ENSDART00000137879

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008752 lncRNA downstream 16073 6429973 ~ 6431348 (-) True XLOC_003891
TCONS_00008751 lncRNA downstream 16289 6429973 ~ 6431132 (-) False XLOC_003891
TCONS_00008750 lncRNA downstream 122864 6316654 ~ 6324557 (-) True XLOC_003887
TCONS_00008450 lncRNA downstream 168723 6276900 ~ 6278698 (-) True XLOC_003886
TCONS_00007448 lncRNA downstream 184712 6261693 ~ 6262709 (-) True XLOC_003885
TCONS_00008753 lncRNA upstream 2590 6455034 ~ 6456300 (-) True XLOC_003893
TCONS_00008754 lncRNA upstream 340102 6792546 ~ 6799938 (-) True XLOC_003895
TCONS_00007460 lncRNA upstream 416872 6869316 ~ 6870035 (-) False XLOC_003897
TCONS_00008451 lncRNA upstream 893356 7345800 ~ 7349497 (-) False XLOC_003908
TCONS_00008755 lncRNA upstream 893482 7345926 ~ 7349386 (-) False XLOC_003908
TCONS_00007451 mRNA downstream 17716 6411169 ~ 6429705 (-) True XLOC_003889
TCONS_00007452 mRNA downstream 26504 6417450 ~ 6420917 (-) True XLOC_003890
TCONS_00007449 mRNA downstream 60849 6349443 ~ 6386572 (-) False XLOC_003888
TCONS_00007450 mRNA downstream 92853 6350030 ~ 6354568 (-) True XLOC_003888
TCONS_00007447 mRNA downstream 181698 6261682 ~ 6265723 (-) False XLOC_003885
TCONS_00007457 mRNA upstream 407432 6859876 ~ 6868287 (-) False XLOC_003896
TCONS_00007458 mRNA upstream 407432 6859876 ~ 6868474 (-) True XLOC_003896
TCONS_00007459 mRNA upstream 416868 6869312 ~ 6880725 (-) False XLOC_003897
TCONS_00007461 mRNA upstream 417243 6869687 ~ 6877973 (-) True XLOC_003897
TCONS_00007462 mRNA upstream 488945 6941389 ~ 6970107 (-) False XLOC_003898
TCONS_00007441 other downstream 240832 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007438 other downstream 375355 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007400 other downstream 2493584 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 5358906 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 5467673 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007456 other upstream 328264 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 491856 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 663803 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007494 other upstream 1658925 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007548 other upstream 4873078 11325522 ~ 11331050 (-) False XLOC_003936

Expression Profile

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