RNA id: TCONS_00007460


Basic Information

Item Value
RNA id TCONS_00007460
length 604
lncRNA type retained_intron
GC content 0.30
exon number 2
gene id XLOC_003897
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6869312 ~ 6880725 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGAATGGGATGCATtggaaaattataaattatatgaaATTCAACCTGAAATCTCACAcagaagacattttaagactagaTTTGATCAAGTTGTTTTTACTAGATGTTGTATTGGACAGAAGAATAACCCATGTTTTTTgttccaaggtgaaaaccctaagaagtcaagttattatttgttgttcctaaaacttaaataggcgacaagacttttgtcaggtagaatATATACACTTATTATATATCTAAAGCATGCTATAAAATTTTACAATTGTTAATTCTTTTATAGAAATTAGAGTCGACAGATTTTGATGAGAAAAAGAAGATAAACAAAAGGAAGCAGATGATTTTGGATGGAAAAGATCCTGATTtggaagaaaaaaggaaaaatgaaTTAGAGAAGATCCGAGGAAAAAATAAGAAACTCAAAGGAAAAAACCCCCAGAgcaaaaaggaaaagaaaaaacatgAGAAAAGTGCAAAAGCGACAGAAGTTGGCTCTTAATTTCCTCTCTTTTGTACAATTTAATATTATGTATATAGCGTGAATATGcttatatttaataaacatgtgATGCAGTGTTGACTGTGTTgctacatgaa

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-031030-3 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human DDX49 (DEAD-box helicase 49).

Ensembl:

ensembl_id ENSDART00000157768

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008754 lncRNA downstream 69378 6792546 ~ 6799938 (-) True XLOC_003895
TCONS_00008753 lncRNA downstream 413016 6455034 ~ 6456300 (-) True XLOC_003893
TCONS_00008752 lncRNA downstream 437968 6429973 ~ 6431348 (-) True XLOC_003891
TCONS_00008751 lncRNA downstream 438184 6429973 ~ 6431132 (-) False XLOC_003891
TCONS_00008750 lncRNA downstream 544759 6316654 ~ 6324557 (-) True XLOC_003887
TCONS_00008451 lncRNA upstream 475765 7345800 ~ 7349497 (-) False XLOC_003908
TCONS_00008755 lncRNA upstream 475891 7345926 ~ 7349386 (-) False XLOC_003908
TCONS_00008756 lncRNA upstream 475891 7345926 ~ 7349427 (-) True XLOC_003908
TCONS_00007486 lncRNA upstream 492389 7362424 ~ 7365383 (-) True XLOC_003910
TCONS_00008757 lncRNA upstream 903797 7773832 ~ 7775701 (-) False XLOC_003912
TCONS_00007458 mRNA downstream 842 6859876 ~ 6868474 (-) True XLOC_003896
TCONS_00007457 mRNA downstream 1029 6859876 ~ 6868287 (-) False XLOC_003896
TCONS_00007453 mRNA downstream 416824 6446235 ~ 6452492 (-) False XLOC_003892
TCONS_00007454 mRNA downstream 416847 6446925 ~ 6452469 (-) False XLOC_003892
TCONS_00007455 mRNA downstream 416872 6447421 ~ 6452444 (-) True XLOC_003892
TCONS_00007462 mRNA upstream 71354 6941389 ~ 6970107 (-) False XLOC_003898
TCONS_00007464 mRNA upstream 74931 6944966 ~ 6974022 (-) True XLOC_003898
TCONS_00007465 mRNA upstream 107233 6977268 ~ 6985463 (-) True XLOC_003899
TCONS_00007466 mRNA upstream 116554 6986589 ~ 6989598 (-) False XLOC_003900
TCONS_00007467 mRNA upstream 116878 6986913 ~ 6989598 (-) False XLOC_003900
TCONS_00007456 other downstream 87240 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007441 other downstream 662727 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007438 other downstream 797250 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007400 other downstream 2915479 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 5780801 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007463 other upstream 74265 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 246212 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007494 other upstream 1241334 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007548 other upstream 4455487 11325522 ~ 11331050 (-) False XLOC_003936
TCONS_00007549 other upstream 4460690 11330725 ~ 11331090 (-) True XLOC_003936

Expression Profile

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