RNA id: TCONS_00007466


Basic Information

Item Value
RNA id TCONS_00007466
length 1295
RNA type mRNA
GC content 0.40
exon number 2
gene id XLOC_003900
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6986589 ~ 6989598 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaagaagaaaaagcagCGTCAGAAAAAGGACTAGAAAAAGTTGTTGCAACTTGCAAGAGGCTTAAAACGCTGTCATTTCTAACAACAATAACTTAACCACGATGGCATTGGGCTCTTTTTATTCACTTTTGGTGAGTCGCATGATGGCAGTAGCCGATGAAATATTCGACTCTGTAAAAGAGAGCATAATTGATTATGAGCAGGAGATTGAACGACTGAGGCAGGAGAACTGCTGTCTGAGGAGCAGAAGATGCAGGTGTGTGGAAACATGCAATGATACTTCAAGTCCGAGAGATGAAGTACTGCAGGGTCAGAGCGGTTCACAGCTCTCAGAAATTCAAATGAAATTGGAGGTTGCCACTGTGATGTCCCCTGATCCTTCGGGTCAAGCTGTTTCCATTGTTTCTTCCCTTTCTGAAGACGTCACTGAGCAGGAACCAGATCAGTGCCTCACGATTCTGCCAAAGGAAATGGTGAAGAGTGAAGATAGTGGCGGTACAGATGCATTGATCACAGTTAAGTCTGAGCTGTTTGATCATCAAACCAGTGAAATGAATTCATTTGCAGCGCTGCCTGACCGCATCTATCAAGTTGACTATCTGATAAGTGAACAAGACGTTCAAACTGACCTCGAAACCTTTAACAAGAAGATCCGGAAGGGTCGGCAAAAGCAGAAGAGTGTGATATGCAAGATTTGCGGAAAGTCTTTCAAGAGTAAAGAACATTTGCAGAGTCACGTAATATTGCATCAGAACGAGAGGCCTTTCTCCTGTGCCTCATGCGGGATTCGTTTTAAGACTAAATTCAACTTGAAAGAACACGAGCGAATCCATTCAGGGGACTATCGATACAGCTGCCCGCGGTGTGGAAGAGGCTTTTCCCGATCGAATCATGTCAGAAACCATCTCAAATCTGCGCGCTGTTTTCTGATTGAGTCTCTAAACCACTAACAAGTACTACATTTTAGTACTTAATTGGAGATAAGACACTAAAACAAAAGAGAGATTTTGATTGAAAACAAGTTACTTGATATTGGTCGCTCTTGGTCTGACTTGTTTGGTTGTTGGATTTCAGAAATGATCATCTTTAAAGCTCTGGAATATGTCTTTTATAATTTCGATGTCATTTTCTGGTCAAATTGTTTCTGTATCAAATAATCTTCCACCTTTCATGTTTACCTTAGTTTATACTGTAGTGAAATGTTCAAAATATTTGAGATGACAATCGGGGTGATTCTGTTATATGGAATTATAAAAGTTCTGGAAAAATAAACTAAAGTTCTGAAAAAGTCTTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070928-39 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

Ensembl:

ensembl_id ENSDART00000102493

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007460 lncRNA downstream 116554 6869316 ~ 6870035 (-) False XLOC_003897
TCONS_00008754 lncRNA downstream 186651 6792546 ~ 6799938 (-) True XLOC_003895
TCONS_00008753 lncRNA downstream 530289 6455034 ~ 6456300 (-) True XLOC_003893
TCONS_00008752 lncRNA downstream 555241 6429973 ~ 6431348 (-) True XLOC_003891
TCONS_00008751 lncRNA downstream 555457 6429973 ~ 6431132 (-) False XLOC_003891
TCONS_00008451 lncRNA upstream 356202 7345800 ~ 7349497 (-) False XLOC_003908
TCONS_00008755 lncRNA upstream 356328 7345926 ~ 7349386 (-) False XLOC_003908
TCONS_00008756 lncRNA upstream 356328 7345926 ~ 7349427 (-) True XLOC_003908
TCONS_00007486 lncRNA upstream 372826 7362424 ~ 7365383 (-) True XLOC_003910
TCONS_00008757 lncRNA upstream 784234 7773832 ~ 7775701 (-) False XLOC_003912
TCONS_00007465 mRNA downstream 1126 6977268 ~ 6985463 (-) True XLOC_003899
TCONS_00007464 mRNA downstream 12567 6944966 ~ 6974022 (-) True XLOC_003898
TCONS_00007462 mRNA downstream 16482 6941389 ~ 6970107 (-) False XLOC_003898
TCONS_00007459 mRNA downstream 105864 6869312 ~ 6880725 (-) False XLOC_003897
TCONS_00007461 mRNA downstream 108616 6869687 ~ 6877973 (-) True XLOC_003897
TCONS_00007469 mRNA upstream 12350 7001948 ~ 7029897 (-) False XLOC_003901
TCONS_00007471 mRNA upstream 12412 7002010 ~ 7030047 (-) False XLOC_003901
TCONS_00007470 mRNA upstream 12412 7002010 ~ 7030047 (-) True XLOC_003901
TCONS_00007472 mRNA upstream 49661 7039259 ~ 7050825 (-) False XLOC_003902
TCONS_00007473 mRNA upstream 51270 7040868 ~ 7078392 (-) False XLOC_003902
TCONS_00007463 other downstream 38571 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007456 other downstream 204513 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007441 other downstream 780000 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007438 other downstream 914523 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007400 other downstream 3032752 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007477 other upstream 126649 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007494 other upstream 1121771 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007548 other upstream 4335924 11325522 ~ 11331050 (-) False XLOC_003936
TCONS_00007549 other upstream 4341127 11330725 ~ 11331090 (-) True XLOC_003936
TCONS_00007551 other upstream 4349206 11338804 ~ 11339100 (-) True XLOC_003938

Expression Profile

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